RNA–Protein interactions for RNA: ENST00000488131.1

CDC42BPA-213, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-213ENST00000488131 AEBP2Q6ZN18 517 aaPredicted RBP18.37■□□□□ 0.53
CDC42BPA-213ENST00000488131 CHIC1Q5VXU3 224 aa17.33■□□□□ 0.37
CDC42BPA-213ENST00000488131 SENP3Q9H4L4 574 aaPredicted RBP15.94■□□□□ 0.14
CDC42BPA-213ENST00000488131 PHF23Q9BUL5 403 aaPredicted RBP15.56■□□□□ 0.08
CDC42BPA-213ENST00000488131 POTEDQ86YR6 584 aa14.99□□□□□ -0.01
CDC42BPA-213ENST00000488131 FOXD1Q16676 465 aa14.83□□□□□ -0.04
CDC42BPA-213ENST00000488131 MSH5O43196 834 aa14.28□□□□□ -0.12
CDC42BPA-213ENST00000488131 PIAS4Q8N2W9 510 aaPredicted RBP13.72□□□□□ -0.21
CDC42BPA-213ENST00000488131 PPP6R1Q9UPN7 881 aa13.27□□□□□ -0.28
CDC42BPA-213ENST00000488131 PLPPR3Q6T4P5 718 aa13.23□□□□□ -0.29
CDC42BPA-213ENST00000488131 ADRA2BP18089 450 aa13.21□□□□□ -0.29
CDC42BPA-213ENST00000488131 CACNB1Q02641 598 aaPredicted RBP12.61□□□□□ -0.39
CDC42BPA-213ENST00000488131 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
CDC42BPA-213ENST00000488131 MAPK8IP2Q13387 824 aaPredicted RBP12.31□□□□□ -0.44
CDC42BPA-213ENST00000488131 SCAF1Q9H7N4 1312 aaKnown RBP12.3□□□□□ -0.44
CDC42BPA-213ENST00000488131 RNF39Q9H2S5 420 aa12.04□□□□□ -0.48
CDC42BPA-213ENST00000488131 DCAF8L1A6NGE4 600 aa11.97□□□□□ -0.49
CDC42BPA-213ENST00000488131 C1QBPQ07021 282 aaKnown RBP11.9□□□□□ -0.5
CDC42BPA-213ENST00000488131 HOXD11P31277 338 aaPredicted RBP11.78□□□□□ -0.52
CDC42BPA-213ENST00000488131 DNAJC5BQ9UF47 199 aa11.63□□□□□ -0.55
CDC42BPA-213ENST00000488131 POTEHQ6S545 545 aa11.63□□□□□ -0.55
CDC42BPA-213ENST00000488131 RNF216Q9NWF9 866 aaPredicted RBP11.53□□□□□ -0.56
CDC42BPA-213ENST00000488131 PPP4R3CPQ6ZMV5 832 aa11.46□□□□□ -0.58
CDC42BPA-213ENST00000488131 CNKSR2Q8WXI2 1034 aa11.45□□□□□ -0.58
CDC42BPA-213ENST00000488131 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.21□□□□□ -0.61
CDC42BPA-213ENST00000488131 NCBP3Q53F19 620 aaKnown RBP11.1□□□□□ -0.63
CDC42BPA-213ENST00000488131 DSG3P32926 999 aa11.03□□□□□ -0.64
CDC42BPA-213ENST00000488131 CAPN15O75808 1086 aa10.94□□□□□ -0.66
CDC42BPA-213ENST00000488131 SPINK5Q9NQ38 1064 aaPredicted RBP10.85□□□□□ -0.67
CDC42BPA-213ENST00000488131 U3KPZ7 1027 aaPredicted RBP10.85□□□□□ -0.67
CDC42BPA-213ENST00000488131 NPM3O75607 178 aaKnown RBP10.76□□□□□ -0.69
CDC42BPA-213ENST00000488131 APLP2Q06481 763 aa10.69□□□□□ -0.7
CDC42BPA-213ENST00000488131 KCNA4P22459 653 aa10.68□□□□□ -0.7
CDC42BPA-213ENST00000488131 RBM42Q9BTD8 480 aaKnown RBP10.66□□□□□ -0.7
CDC42BPA-213ENST00000488131 ZNF219Q9P2Y4 722 aaPredicted RBP10.64□□□□□ -0.71
CDC42BPA-213ENST00000488131 CHRDL2Q6WN34 429 aa10.6□□□□□ -0.71
CDC42BPA-213ENST00000488131 SP7Q8TDD2 431 aaPredicted RBP10.6□□□□□ -0.71
CDC42BPA-213ENST00000488131 TRHP20396 242 aaPredicted RBP10.57□□□□□ -0.72
CDC42BPA-213ENST00000488131 ABCB7O75027 752 aa10.56□□□□□ -0.72
CDC42BPA-213ENST00000488131 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.47□□□□□ -0.73
CDC42BPA-213ENST00000488131 HNRNPUL2Q1KMD3 747 aaKnown RBP10.47□□□□□ -0.73
CDC42BPA-213ENST00000488131 SAMD1Q6SPF0 538 aaPredicted RBP10.33□□□□□ -0.76
CDC42BPA-213ENST00000488131 SLC4A2P04920 1241 aa10.3□□□□□ -0.76
CDC42BPA-213ENST00000488131 EHMT2Q96KQ7 1210 aa10.27□□□□□ -0.76
CDC42BPA-213ENST00000488131 AKT1S1Q96B36 256 aa10.23□□□□□ -0.77
CDC42BPA-213ENST00000488131 HAX1O00165 279 aa10.2□□□□□ -0.78
CDC42BPA-213ENST00000488131 PIP4P2Q8N4L2 257 aa10.17□□□□□ -0.78
CDC42BPA-213ENST00000488131 SLC4A1APQ9BWU0 796 aaKnown RBP10.16□□□□□ -0.78
CDC42BPA-213ENST00000488131 POLA2Q14181 598 aa10.14□□□□□ -0.79
CDC42BPA-213ENST00000488131 REM2Q8IYK8 340 aaPredicted RBP10.07□□□□□ -0.8
CDC42BPA-213ENST00000488131 FXR2P51116 673 aaKnown RBP eCLIP10.05□□□□□ -0.88e-8■■■■■ 29.6
CDC42BPA-213ENST00000488131 CSRNP3Q8WYN3 585 aa10.05□□□□□ -0.8
CDC42BPA-213ENST00000488131 MYCNP04198 464 aaPredicted RBP10.04□□□□□ -0.8
CDC42BPA-213ENST00000488131 ZBTB12Q9Y330 459 aaPredicted RBP10.03□□□□□ -0.8
CDC42BPA-213ENST00000488131 PITPNM1O00562 1244 aa9.95□□□□□ -0.82
CDC42BPA-213ENST00000488131 LHX8Q68G74 356 aa9.93□□□□□ -0.82
CDC42BPA-213ENST00000488131 EVX2Q03828 476 aa9.91□□□□□ -0.82
CDC42BPA-213ENST00000488131 ZBTB22O15209 634 aa9.88□□□□□ -0.83
CDC42BPA-213ENST00000488131 FOXD4L1Q9NU39 408 aa9.83□□□□□ -0.84
CDC42BPA-213ENST00000488131 PLSCR2Q9NRY7 297 aa9.83□□□□□ -0.84
CDC42BPA-213ENST00000488131 OSCARQ8IYS5 282 aa9.81□□□□□ -0.84
CDC42BPA-213ENST00000488131 C19orf67A6NJJ6 358 aa9.75□□□□□ -0.85
CDC42BPA-213ENST00000488131 GABBR2O75899 941 aa9.75□□□□□ -0.85
CDC42BPA-213ENST00000488131 PRKAR2AP13861 404 aaKnown RBP9.7□□□□□ -0.86
CDC42BPA-213ENST00000488131 ATF5Q9Y2D1 282 aaPredicted RBP9.66□□□□□ -0.86
CDC42BPA-213ENST00000488131 SPDYE2BA6NHP3 402 aa9.61□□□□□ -0.87
CDC42BPA-213ENST00000488131 SPDYE6P0CI01 402 aa9.61□□□□□ -0.87
CDC42BPA-213ENST00000488131 ATXN8OSP0DMR3 200 aa9.61□□□□□ -0.87
CDC42BPA-213ENST00000488131 SPDYE2Q495Y8 402 aa9.61□□□□□ -0.87
CDC42BPA-213ENST00000488131 SPDYE1Q8NFV5 336 aaPredicted RBP9.61□□□□□ -0.87
CDC42BPA-213ENST00000488131 CLCN6P51797 869 aa9.56□□□□□ -0.88
CDC42BPA-213ENST00000488131 CLEC11AQ9Y240 323 aa9.55□□□□□ -0.88
CDC42BPA-213ENST00000488131 FBLN2P98095 1184 aa9.53□□□□□ -0.88
CDC42BPA-213ENST00000488131 POTEIP0CG38 1075 aa9.48□□□□□ -0.89
CDC42BPA-213ENST00000488131 PCDH10Q9P2E7 1040 aa9.4□□□□□ -0.9
CDC42BPA-213ENST00000488131 DCBLD2Q96PD2 775 aa9.39□□□□□ -0.91
CDC42BPA-213ENST00000488131 CHADLQ6NUI6 762 aa9.38□□□□□ -0.91
CDC42BPA-213ENST00000488131 POTEMA6NI47 508 aa9.36□□□□□ -0.91
CDC42BPA-213ENST00000488131 CD44P16070 742 aaKnown RBP9.36□□□□□ -0.91
CDC42BPA-213ENST00000488131 SSUH2Q9Y2M2 353 aa9.36□□□□□ -0.91
CDC42BPA-213ENST00000488131 PRR29P0C7W0 189 aa9.34□□□□□ -0.91
CDC42BPA-213ENST00000488131 ZNF692Q9BU19 519 aaPredicted RBP9.34□□□□□ -0.91
CDC42BPA-213ENST00000488131 POTEGQ6S5H5 508 aa9.31□□□□□ -0.92
CDC42BPA-213ENST00000488131 OTUD5Q96G74 571 aa9.29□□□□□ -0.92
CDC42BPA-213ENST00000488131 FARP1Q9Y4F1 1045 aaPredicted RBP9.25□□□□□ -0.93
CDC42BPA-213ENST00000488131 MKRN4PQ13434 485 aaPredicted RBP9.23□□□□□ -0.93
CDC42BPA-213ENST00000488131 ZNF579Q8NAF0 562 aaKnown RBP9.23□□□□□ -0.93
CDC42BPA-213ENST00000488131 PABPN1Q86U42 306 aaKnown RBP eCLIP9.14□□□□□ -0.95
CDC42BPA-213ENST00000488131 POTEB2H3BUK9 544 aa9.13□□□□□ -0.95
CDC42BPA-213ENST00000488131 ZRANB1Q9UGI0 708 aa9.13□□□□□ -0.95
CDC42BPA-213ENST00000488131 GALR2O43603 387 aaPredicted RBP9.07□□□□□ -0.96
CDC42BPA-213ENST00000488131 MAMSTRQ6ZN01 415 aa9.07□□□□□ -0.96
CDC42BPA-213ENST00000488131 FKBP8Q14318 412 aa9□□□□□ -0.97
CDC42BPA-213ENST00000488131 PAK3O75914 559 aaPredicted RBP9□□□□□ -0.97
CDC42BPA-213ENST00000488131 STAG3Q9UJ98 1225 aa8.99□□□□□ -0.97
CDC42BPA-213ENST00000488131 SLC39A7Q92504 469 aa8.97□□□□□ -0.97
CDC42BPA-213ENST00000488131 C7P10643 843 aa8.96□□□□□ -0.97
CDC42BPA-213ENST00000488131 FAM163AQ96GL9 167 aaPredicted RBP8.96□□□□□ -0.97
CDC42BPA-213ENST00000488131 LCE2DQ5TA82 110 aaPredicted RBP8.94□□□□□ -0.98
CDC42BPA-213ENST00000488131 METRNQ9UJH8 293 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms