RNA–Protein interactions for RNA: ENST00000526966.5

CAPN1-206, Transcript of calpain 1, humanhuman

TSL 4

Gene CAPN1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-206ENST00000526966 NISCHQ9Y2I1 1504 aa47.46■■■■■ 5.19
CAPN1-206ENST00000526966 CCDC180Q9P1Z9 1646 aa42.74■■■■■ 4.43
CAPN1-206ENST00000526966 ABCC9O60706 1549 aa42.71■■■■■ 4.43
CAPN1-206ENST00000526966 RB1CC1Q8TDY2 1594 aa40.67■■■■■ 4.1
CAPN1-206ENST00000526966 NACADO15069 1562 aa40.37■■■■■ 4.05
CAPN1-206ENST00000526966 DNAJC5BQ9UF47 199 aa40.15■■■■■ 4.02
CAPN1-206ENST00000526966 DCAF8L2P0C7V8 631 aa39.89■■■■□ 3.98
CAPN1-206ENST00000526966 UNC13AQ9UPW8 1703 aa39.84■■■■□ 3.97
CAPN1-206ENST00000526966 MYO15BQ96JP2 1530 aa39.83■■■■□ 3.97
CAPN1-206ENST00000526966 PABPN1Q86U42 306 aaKnown RBP eCLIP39.67■■■■□ 3.94
CAPN1-206ENST00000526966 BICRAQ9NZM4 1560 aa39.52■■■■□ 3.92
CAPN1-206ENST00000526966 ZCCHC6Q5VYS8 1495 aaKnown RBP39.34■■■■□ 3.89
CAPN1-206ENST00000526966 DCAF1Q9Y4B6 1507 aa39.26■■■■□ 3.88
CAPN1-206ENST00000526966 SHROOM4Q9ULL8 1493 aa39.01■■■■□ 3.84
CAPN1-206ENST00000526966 SCRIBQ14160 1630 aa38.83■■■■□ 3.81
CAPN1-206ENST00000526966 CC2D2AQ9P2K1 1620 aa38.64■■■■□ 3.78
CAPN1-206ENST00000526966 EIF4G1Q04637 1599 aaKnown RBP38.54■■■■□ 3.76
CAPN1-206ENST00000526966 CECR2Q9BXF3 1484 aa38.5■■■■□ 3.75
CAPN1-206ENST00000526966 NCAPD3P42695 1498 aa37.26■■■■□ 3.55
CAPN1-206ENST00000526966 ATAD2BQ9ULI0 1458 aa37.11■■■■□ 3.53
CAPN1-206ENST00000526966 SMARCA4P51532 1647 aa37.08■■■■□ 3.53
CAPN1-206ENST00000526966 SMARCA2P51531 1590 aa37.02■■■■□ 3.52
CAPN1-206ENST00000526966 HMGXB3Q12766 1538 aa37.01■■■■□ 3.52
CAPN1-206ENST00000526966 DNAJC5Q9H3Z4 198 aa36.97■■■■□ 3.51
CAPN1-206ENST00000526966 CUX2O14529 1486 aa36.93■■■■□ 3.5
CAPN1-206ENST00000526966 ERCC6Q03468 1493 aa36.87■■■■□ 3.49
CAPN1-206ENST00000526966 BAZ1AQ9NRL2 1556 aaPredicted RBP36.87■■■■□ 3.49
CAPN1-206ENST00000526966 PEG3Q9GZU2 1588 aa36.77■■■■□ 3.48
CAPN1-206ENST00000526966 BAZ1BQ9UIG0 1483 aaKnown RBP36.73■■■■□ 3.47
CAPN1-206ENST00000526966 NESP48681 1621 aa36.67■■■■□ 3.46
CAPN1-206ENST00000526966 MROH2BQ7Z745 1585 aa36.56■■■■□ 3.44
CAPN1-206ENST00000526966 LAMC3Q9Y6N6 1575 aa36.46■■■■□ 3.43
CAPN1-206ENST00000526966 THOC2Q8NI27 1593 aaKnown RBP36.42■■■■□ 3.42
CAPN1-206ENST00000526966 KIF21AQ7Z4S6 1674 aa36.27■■■■□ 3.4
CAPN1-206ENST00000526966 PDS5BQ9NTI5 1447 aa36.18■■■■□ 3.38
CAPN1-206ENST00000526966 WIZO95785 1651 aa36.13■■■■□ 3.37
CAPN1-206ENST00000526966 CADPSQ9ULU8 1353 aa36.07■■■■□ 3.36
CAPN1-206ENST00000526966 MRC2Q9UBG0 1479 aa35.92■■■■□ 3.34
CAPN1-206ENST00000526966 WDR62O43379 1518 aa35.88■■■■□ 3.33
CAPN1-206ENST00000526966 RSF1Q96T23 1441 aaPredicted RBP35.74■■■■□ 3.31
CAPN1-206ENST00000526966 CEP164Q9UPV0 1460 aa35.73■■■■□ 3.31
CAPN1-206ENST00000526966 TOP2AP11388 1531 aaKnown RBP35.68■■■■□ 3.3
CAPN1-206ENST00000526966 FANCD2Q9BXW9 1451 aa35.68■■■■□ 3.3
CAPN1-206ENST00000526966 CFTRP13569 1480 aa35.67■■■■□ 3.3
CAPN1-206ENST00000526966 PRDM2Q13029 1718 aa35.42■■■■□ 3.26
CAPN1-206ENST00000526966 URB2Q14146 1524 aaKnown RBP35.42■■■■□ 3.26
CAPN1-206ENST00000526966 CCDC88BA6NC98 1476 aa35.22■■■■□ 3.23
CAPN1-206ENST00000526966 TRIM41Q8WV44 630 aa35.2■■■■□ 3.23
CAPN1-206ENST00000526966 OSCARQ8IYS5 282 aa35.11■■■■□ 3.21
CAPN1-206ENST00000526966 IFT140Q96RY7 1462 aa35.03■■■■□ 3.2
CAPN1-206ENST00000526966 TOPBP1Q92547 1522 aa35.01■■■■□ 3.19
CAPN1-206ENST00000526966 ZNF608Q9ULD9 1512 aaPredicted RBP34.97■■■■□ 3.19
CAPN1-206ENST00000526966 ABCC8Q09428 1581 aa34.92■■■■□ 3.18
CAPN1-206ENST00000526966 DNMBPQ6XZF7 1577 aa34.89■■■■□ 3.18
CAPN1-206ENST00000526966 EIF4G3O43432 1585 aaKnown RBP34.83■■■■□ 3.17
CAPN1-206ENST00000526966 RIMBP3CA6NJZ7 1639 aa34.78■■■■□ 3.16
CAPN1-206ENST00000526966 RIMBP3BA6NNM3 1639 aa34.78■■■■□ 3.16
CAPN1-206ENST00000526966 RIMBP3Q9UFD9 1639 aa34.78■■■■□ 3.16
CAPN1-206ENST00000526966 TARBP1Q13395 1621 aaKnown RBP34.75■■■■□ 3.15
CAPN1-206ENST00000526966 ARHGEF11O15085 1522 aa34.65■■■■□ 3.14
CAPN1-206ENST00000526966 POLA1P09884 1462 aaPredicted RBP34.65■■■■□ 3.14
CAPN1-206ENST00000526966 CHD1O14646 1710 aa34.61■■■■□ 3.13
CAPN1-206ENST00000526966 AQRO60306 1485 aaKnown RBP eCLIP34.61■■■■□ 3.134e-7■■■■□ 19.3
CAPN1-206ENST00000526966 RAD54L2Q9Y4B4 1467 aa34.47■■■■□ 3.11
CAPN1-206ENST00000526966 SOGA1O94964 1423 aa34.43■■■■□ 3.1
CAPN1-206ENST00000526966 WDR97A6NE52 1622 aa34.43■■■■□ 3.1
CAPN1-206ENST00000526966 FGD5Q6ZNL6 1462 aa34.39■■■■□ 3.1
CAPN1-206ENST00000526966 CUX1P39880 1505 aa34.36■■■■□ 3.09
CAPN1-206ENST00000526966 TDRD9Q8NDG6 1382 aaKnown RBP34.36■■■■□ 3.09
CAPN1-206ENST00000526966 FBLN2P98095 1184 aa34.31■■■■□ 3.08
CAPN1-206ENST00000526966 SNAPC4Q5SXM2 1469 aa34.29■■■■□ 3.08
CAPN1-206ENST00000526966 ARAP1Q96P48 1450 aa34.29■■■■□ 3.08
CAPN1-206ENST00000526966 CYB5RLQ6IPT4 315 aa34.27■■■■□ 3.08
CAPN1-206ENST00000526966 MAGI1Q96QZ7 1491 aaPredicted RBP34.22■■■■□ 3.07
CAPN1-206ENST00000526966 CLASP1Q7Z460 1538 aa34.21■■■■□ 3.07
CAPN1-206ENST00000526966 GRIN2BQ13224 1484 aa34.19■■■■□ 3.06
CAPN1-206ENST00000526966 SYNJ1O43426 1573 aa34.15■■■■□ 3.06
CAPN1-206ENST00000526966 PBRM1Q86U86 1689 aa34.11■■■■□ 3.05
CAPN1-206ENST00000526966 SYNJ2O15056 1496 aa34.09■■■■□ 3.05
CAPN1-206ENST00000526966 CHMP7Q8WUX9 453 aaPredicted RBP34.08■■■■□ 3.05
CAPN1-206ENST00000526966 GAPVD1Q14C86 1478 aa34.03■■■■□ 3.04
CAPN1-206ENST00000526966 ABCA5Q8WWZ7 1642 aa34.03■■■■□ 3.04
CAPN1-206ENST00000526966 ABCA10Q8WWZ4 1543 aa34.03■■■■□ 3.04
CAPN1-206ENST00000526966 SUPT5HO00267 1087 aaKnown RBP33.91■■■■□ 3.02
CAPN1-206ENST00000526966 TRHP20396 242 aaPredicted RBP33.9■■■■□ 3.02
CAPN1-206ENST00000526966 BIVM-ERCC5R4GMW8 1640 aa33.83■■■■□ 3.01
CAPN1-206ENST00000526966 WRNQ14191 1432 aaPredicted RBP eCLIP33.81■■■■□ 3
CAPN1-206ENST00000526966 TOP2BQ02880 1626 aa33.8■■■■□ 3
CAPN1-206ENST00000526966 ADAMTS12P58397 1594 aa33.77■■■■□ 3
CAPN1-206ENST00000526966 GRIN2AQ12879 1464 aa33.76■■■■□ 3
CAPN1-206ENST00000526966 NUP160Q12769 1436 aa33.67■■■□□ 2.98
CAPN1-206ENST00000526966 CEP170Q5SW79 1584 aa33.67■■■□□ 2.98
CAPN1-206ENST00000526966 ERCC6L2Q5T890 1561 aa33.63■■■□□ 2.97
CAPN1-206ENST00000526966 FHAD1B1AJZ9 1412 aa33.61■■■□□ 2.97
CAPN1-206ENST00000526966 ERICH3Q5RHP9 1530 aa33.6■■■□□ 2.97
CAPN1-206ENST00000526966 SHROOM2Q13796 1616 aa33.58■■■□□ 2.97
CAPN1-206ENST00000526966 RUSC2Q8N2Y8 1516 aa33.3■■■□□ 2.92
CAPN1-206ENST00000526966 PRG4Q92954 1404 aaPredicted RBP33.29■■■□□ 2.92
CAPN1-206ENST00000526966 JPH4Q96JJ6 628 aa33.22■■■□□ 2.91
CAPN1-206ENST00000526966 KIF13AQ9H1H9 1805 aa33.2■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms