RNA–Protein interactions for RNA: ENST00000503982.1

LSM6-203, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 820 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-203ENST00000503982 NISCHQ9Y2I1 1504 aa54.4■■■■■ 6.3
LSM6-203ENST00000503982 CCDC180Q9P1Z9 1646 aa48.72■■■■■ 5.39
LSM6-203ENST00000503982 ABCC9O60706 1549 aa48.42■■■■■ 5.34
LSM6-203ENST00000503982 RB1CC1Q8TDY2 1594 aa46.23■■■■■ 4.99
LSM6-203ENST00000503982 DCAF8L2P0C7V8 631 aa46.01■■■■■ 4.96
LSM6-203ENST00000503982 NACADO15069 1562 aa45.93■■■■■ 4.94
LSM6-203ENST00000503982 MYO15BQ96JP2 1530 aa45.3■■■■■ 4.84
LSM6-203ENST00000503982 UNC13AQ9UPW8 1703 aa45.23■■■■■ 4.83
LSM6-203ENST00000503982 ZCCHC6Q5VYS8 1495 aaKnown RBP45.15■■■■■ 4.82
LSM6-203ENST00000503982 PABPN1Q86U42 306 aaKnown RBP eCLIP45.13■■■■■ 4.82
LSM6-203ENST00000503982 DNAJC5BQ9UF47 199 aa44.93■■■■■ 4.78
LSM6-203ENST00000503982 DCAF1Q9Y4B6 1507 aa44.89■■■■■ 4.78
LSM6-203ENST00000503982 BICRAQ9NZM4 1560 aa44.75■■■■■ 4.75
LSM6-203ENST00000503982 SCRIBQ14160 1630 aa44.51■■■■■ 4.72
LSM6-203ENST00000503982 SHROOM4Q9ULL8 1493 aa44.17■■■■■ 4.66
LSM6-203ENST00000503982 CC2D2AQ9P2K1 1620 aa43.73■■■■■ 4.59
LSM6-203ENST00000503982 EIF4G1Q04637 1599 aaKnown RBP43.7■■■■■ 4.59
LSM6-203ENST00000503982 CECR2Q9BXF3 1484 aa43.53■■■■■ 4.56
LSM6-203ENST00000503982 SMARCA4P51532 1647 aa42.42■■■■■ 4.38
LSM6-203ENST00000503982 NCAPD3P42695 1498 aa42.32■■■■■ 4.37
LSM6-203ENST00000503982 ATAD2BQ9ULI0 1458 aa42.3■■■■■ 4.36
LSM6-203ENST00000503982 SMARCA2P51531 1590 aa42.27■■■■■ 4.36
LSM6-203ENST00000503982 BAZ1AQ9NRL2 1556 aaPredicted RBP42.26■■■■■ 4.36
LSM6-203ENST00000503982 HMGXB3Q12766 1538 aa42.1■■■■■ 4.33
LSM6-203ENST00000503982 BAZ1BQ9UIG0 1483 aaKnown RBP42■■■■■ 4.31
LSM6-203ENST00000503982 MROH2BQ7Z745 1585 aa41.94■■■■■ 4.3
LSM6-203ENST00000503982 PEG3Q9GZU2 1588 aa41.88■■■■■ 4.3
LSM6-203ENST00000503982 ERCC6Q03468 1493 aa41.85■■■■■ 4.29
LSM6-203ENST00000503982 NESP48681 1621 aa41.66■■■■■ 4.26
LSM6-203ENST00000503982 WIZO95785 1651 aa41.54■■■■■ 4.24
LSM6-203ENST00000503982 CUX2O14529 1486 aa41.51■■■■■ 4.24
LSM6-203ENST00000503982 LAMC3Q9Y6N6 1575 aa41.42■■■■■ 4.22
LSM6-203ENST00000503982 KIF21AQ7Z4S6 1674 aa41.21■■■■■ 4.19
LSM6-203ENST00000503982 PDS5BQ9NTI5 1447 aa41.18■■■■■ 4.18
LSM6-203ENST00000503982 RSF1Q96T23 1441 aaPredicted RBP41.17■■■■■ 4.18
LSM6-203ENST00000503982 THOC2Q8NI27 1593 aaKnown RBP41.14■■■■■ 4.18
LSM6-203ENST00000503982 CADPSQ9ULU8 1353 aa41.12■■■■■ 4.17
LSM6-203ENST00000503982 DNAJC5Q9H3Z4 198 aa41.03■■■■■ 4.16
LSM6-203ENST00000503982 TOP2AP11388 1531 aaKnown RBP40.98■■■■■ 4.15
LSM6-203ENST00000503982 MRC2Q9UBG0 1479 aa40.8■■■■■ 4.12
LSM6-203ENST00000503982 CEP164Q9UPV0 1460 aa40.75■■■■■ 4.11
LSM6-203ENST00000503982 FANCD2Q9BXW9 1451 aa40.7■■■■■ 4.11
LSM6-203ENST00000503982 CFTRP13569 1480 aa40.69■■■■■ 4.1
LSM6-203ENST00000503982 WDR62O43379 1518 aa40.64■■■■■ 4.1
LSM6-203ENST00000503982 PRDM2Q13029 1718 aa40.5■■■■■ 4.07
LSM6-203ENST00000503982 CCDC88BA6NC98 1476 aa40.5■■■■■ 4.07
LSM6-203ENST00000503982 URB2Q14146 1524 aaKnown RBP40.31■■■■■ 4.04
LSM6-203ENST00000503982 TOPBP1Q92547 1522 aa39.96■■■■□ 3.99
LSM6-203ENST00000503982 ABCC8Q09428 1581 aa39.9■■■■□ 3.98
LSM6-203ENST00000503982 IFT140Q96RY7 1462 aa39.88■■■■□ 3.97
LSM6-203ENST00000503982 DNMBPQ6XZF7 1577 aa39.87■■■■□ 3.97
LSM6-203ENST00000503982 SUPT5HO00267 1087 aaKnown RBP39.84■■■■□ 3.97
LSM6-203ENST00000503982 ZNF608Q9ULD9 1512 aaPredicted RBP39.76■■■■□ 3.96
LSM6-203ENST00000503982 OSCARQ8IYS5 282 aa39.72■■■■□ 3.95
LSM6-203ENST00000503982 EIF4G3O43432 1585 aaKnown RBP39.63■■■■□ 3.93
LSM6-203ENST00000503982 TRIM41Q8WV44 630 aa39.6■■■■□ 3.93
LSM6-203ENST00000503982 POLA1P09884 1462 aaPredicted RBP39.56■■■■□ 3.92
LSM6-203ENST00000503982 TARBP1Q13395 1621 aaKnown RBP39.55■■■■□ 3.92
LSM6-203ENST00000503982 AQRO60306 1485 aaKnown RBP eCLIP39.47■■■■□ 3.91
LSM6-203ENST00000503982 RAD54L2Q9Y4B4 1467 aa39.44■■■■□ 3.9
LSM6-203ENST00000503982 SOGA1O94964 1423 aa39.42■■■■□ 3.9
LSM6-203ENST00000503982 FGD5Q6ZNL6 1462 aa39.41■■■■□ 3.9
LSM6-203ENST00000503982 CUX1P39880 1505 aa39.4■■■■□ 3.9
LSM6-203ENST00000503982 CHD1O14646 1710 aa39.33■■■■□ 3.89
LSM6-203ENST00000503982 TDRD9Q8NDG6 1382 aaKnown RBP39.3■■■■□ 3.88
LSM6-203ENST00000503982 FBLN2P98095 1184 aa39.29■■■■□ 3.88
LSM6-203ENST00000503982 WDR97A6NE52 1622 aa39.19■■■■□ 3.86
LSM6-203ENST00000503982 RIMBP3CA6NJZ7 1639 aa39.19■■■■□ 3.86
LSM6-203ENST00000503982 RIMBP3BA6NNM3 1639 aa39.19■■■■□ 3.86
LSM6-203ENST00000503982 RIMBP3Q9UFD9 1639 aa39.19■■■■□ 3.86
LSM6-203ENST00000503982 SNAPC4Q5SXM2 1469 aa39.11■■■■□ 3.85
LSM6-203ENST00000503982 ARHGEF11O15085 1522 aa39.06■■■■□ 3.84
LSM6-203ENST00000503982 GRIN2BQ13224 1484 aa39.04■■■■□ 3.84
LSM6-203ENST00000503982 PBRM1Q86U86 1689 aa39.02■■■■□ 3.84
LSM6-203ENST00000503982 CHMP7Q8WUX9 453 aaPredicted RBP38.99■■■■□ 3.83
LSM6-203ENST00000503982 MAGI1Q96QZ7 1491 aaPredicted RBP38.98■■■■□ 3.83
LSM6-203ENST00000503982 GAPVD1Q14C86 1478 aa38.96■■■■□ 3.83
LSM6-203ENST00000503982 ABCA10Q8WWZ4 1543 aa38.92■■■■□ 3.82
LSM6-203ENST00000503982 WRNQ14191 1432 aaPredicted RBP eCLIP38.9■■■■□ 3.82
LSM6-203ENST00000503982 BIVM-ERCC5R4GMW8 1640 aa38.9■■■■□ 3.82
LSM6-203ENST00000503982 TOP2BQ02880 1626 aa38.88■■■■□ 3.81
LSM6-203ENST00000503982 SYNJ1O43426 1573 aa38.87■■■■□ 3.81
LSM6-203ENST00000503982 ABCA5Q8WWZ7 1642 aa38.86■■■■□ 3.81
LSM6-203ENST00000503982 SYNJ2O15056 1496 aa38.85■■■■□ 3.81
LSM6-203ENST00000503982 CYB5RLQ6IPT4 315 aa38.81■■■■□ 3.8
LSM6-203ENST00000503982 CLASP1Q7Z460 1538 aa38.73■■■■□ 3.79
LSM6-203ENST00000503982 ARAP1Q96P48 1450 aa38.68■■■■□ 3.78
LSM6-203ENST00000503982 ADAMTS12P58397 1594 aa38.57■■■■□ 3.77
LSM6-203ENST00000503982 GRIN2AQ12879 1464 aa38.52■■■■□ 3.76
LSM6-203ENST00000503982 ERICH3Q5RHP9 1530 aa38.47■■■■□ 3.75
LSM6-203ENST00000503982 FHAD1B1AJZ9 1412 aa38.46■■■■□ 3.75
LSM6-203ENST00000503982 CEP170Q5SW79 1584 aa38.37■■■■□ 3.73
LSM6-203ENST00000503982 TRHP20396 242 aaPredicted RBP38.37■■■■□ 3.73
LSM6-203ENST00000503982 NUP160Q12769 1436 aa38.31■■■■□ 3.72
LSM6-203ENST00000503982 ERCC6L2Q5T890 1561 aa38.2■■■■□ 3.71
LSM6-203ENST00000503982 KIF27Q86VH2 1401 aa38.16■■■■□ 3.7
LSM6-203ENST00000503982 SHROOM2Q13796 1616 aa38.13■■■■□ 3.69
LSM6-203ENST00000503982 CUL7Q14999 1698 aa38.06■■■■□ 3.68
LSM6-203ENST00000503982 IGF1RP08069 1367 aa38.01■■■■□ 3.68
LSM6-203ENST00000503982 PRG4Q92954 1404 aaPredicted RBP38.01■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms