RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	NISCH	Q9Y2I1	1504 aa		56.25	■■■■■ 6.6
CAPN1-222	ENST00000532285	CCDC180	Q9P1Z9	1646 aa		50.18	■■■■■ 5.62
CAPN1-222	ENST00000532285	ABCC9	O60706	1549 aa		49.27	■■■■■ 5.48
CAPN1-222	ENST00000532285	RB1CC1	Q8TDY2	1594 aa		47.34	■■■■■ 5.17
CAPN1-222	ENST00000532285	NACAD	O15069	1562 aa		47.22	■■■■■ 5.15
CAPN1-222	ENST00000532285	DCAF8L2	P0C7V8	631 aa		47.09	■■■■■ 5.13
CAPN1-222	ENST00000532285	MYO15B	Q96JP2	1530 aa		46.84	■■■■■ 5.09
CAPN1-222	ENST00000532285	ZCCHC6	Q5VYS8	1495 aa	Known RBP	46.78	■■■■■ 5.08
CAPN1-222	ENST00000532285	DCAF1	Q9Y4B6	1507 aa		46.55	■■■■■ 5.04
CAPN1-222	ENST00000532285	UNC13A	Q9UPW8	1703 aa		46.32	■■■■■ 5.01
CAPN1-222	ENST00000532285	PABPN1	Q86U42	306 aa	Known RBP eCLIP	45.98	■■■■■ 4.95
CAPN1-222	ENST00000532285	BICRA	Q9NZM4	1560 aa		45.89	■■■■■ 4.94
CAPN1-222	ENST00000532285	SCRIB	Q14160	1630 aa		45.71	■■■■■ 4.91
CAPN1-222	ENST00000532285	DNAJC5B	Q9UF47	199 aa		45.44	■■■■■ 4.86
CAPN1-222	ENST00000532285	SHROOM4	Q9ULL8	1493 aa		45.4	■■■■■ 4.86
CAPN1-222	ENST00000532285	EIF4G1	Q04637	1599 aa	Known RBP	44.7	■■■■■ 4.75
CAPN1-222	ENST00000532285	CC2D2A	Q9P2K1	1620 aa		44.6	■■■■■ 4.73
CAPN1-222	ENST00000532285	CECR2	Q9BXF3	1484 aa		44.31	■■■■■ 4.68
CAPN1-222	ENST00000532285	SMARCA4	P51532	1647 aa		43.72	■■■■■ 4.59
CAPN1-222	ENST00000532285	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	43.63	■■■■■ 4.57
CAPN1-222	ENST00000532285	NCAPD3	P42695	1498 aa		43.54	■■■■■ 4.56
CAPN1-222	ENST00000532285	ATAD2B	Q9ULI0	1458 aa		43.51	■■■■■ 4.56
CAPN1-222	ENST00000532285	SMARCA2	P51531	1590 aa		43.5	■■■■■ 4.55
CAPN1-222	ENST00000532285	MROH2B	Q7Z745	1585 aa		43.33	■■■■■ 4.53
CAPN1-222	ENST00000532285	HMGXB3	Q12766	1538 aa		43.32	■■■■■ 4.53
CAPN1-222	ENST00000532285	PEG3	Q9GZU2	1588 aa		43.3	■■■■■ 4.52
CAPN1-222	ENST00000532285	BAZ1B	Q9UIG0	1483 aa	Known RBP	43.16	■■■■■ 4.5
CAPN1-222	ENST00000532285	WIZ	O95785	1651 aa		42.89	■■■■■ 4.46
CAPN1-222	ENST00000532285	RSF1	Q96T23	1441 aa	Predicted RBP	42.73	■■■■■ 4.43
CAPN1-222	ENST00000532285	NES	P48681	1621 aa		42.56	■■■■■ 4.4
CAPN1-222	ENST00000532285	ERCC6	Q03468	1493 aa		42.51	■■■■■ 4.4
CAPN1-222	ENST00000532285	LAMC3	Q9Y6N6	1575 aa		42.48	■■■■■ 4.39
CAPN1-222	ENST00000532285	TOP2A	P11388	1531 aa	Known RBP	42.4	■■■■■ 4.38
CAPN1-222	ENST00000532285	CADPS	Q9ULU8	1353 aa		42.26	■■■■■ 4.35
CAPN1-222	ENST00000532285	PDS5B	Q9NTI5	1447 aa		42.18	■■■■■ 4.34
CAPN1-222	ENST00000532285	CUX2	O14529	1486 aa		42.17	■■■■■ 4.34
CAPN1-222	ENST00000532285	KIF21A	Q7Z4S6	1674 aa		42.12	■■■■■ 4.33
CAPN1-222	ENST00000532285	THOC2	Q8NI27	1593 aa	Known RBP	42.01	■■■■■ 4.32
CAPN1-222	ENST00000532285	CFTR	P13569	1480 aa		41.95	■■■■■ 4.31
CAPN1-222	ENST00000532285	CCDC88B	A6NC98	1476 aa		41.89	■■■■■ 4.3
CAPN1-222	ENST00000532285	FANCD2	Q9BXW9	1451 aa		41.78	■■■■■ 4.28
CAPN1-222	ENST00000532285	CEP164	Q9UPV0	1460 aa		41.75	■■■■■ 4.27
CAPN1-222	ENST00000532285	MRC2	Q9UBG0	1479 aa		41.74	■■■■■ 4.27
CAPN1-222	ENST00000532285	PRDM2	Q13029	1718 aa		41.73	■■■■■ 4.27
CAPN1-222	ENST00000532285	WDR62	O43379	1518 aa		41.62	■■■■■ 4.25
CAPN1-222	ENST00000532285	SUPT5H	O00267	1087 aa	Known RBP	41.45	■■■■■ 4.23
CAPN1-222	ENST00000532285	URB2	Q14146	1524 aa	Known RBP	41.37	■■■■■ 4.21
CAPN1-222	ENST00000532285	DNAJC5	Q9H3Z4	198 aa		41.17	■■■■■ 4.18
CAPN1-222	ENST00000532285	ABCC8	Q09428	1581 aa		41.11	■■■■■ 4.17
CAPN1-222	ENST00000532285	TOPBP1	Q92547	1522 aa		41.08	■■■■■ 4.17
CAPN1-222	ENST00000532285	DNMBP	Q6XZF7	1577 aa		41.03	■■■■■ 4.16
CAPN1-222	ENST00000532285	IFT140	Q96RY7	1462 aa		40.89	■■■■■ 4.14
CAPN1-222	ENST00000532285	POLA1	P09884	1462 aa	Predicted RBP	40.7	■■■■■ 4.11
CAPN1-222	ENST00000532285	ZNF608	Q9ULD9	1512 aa	Predicted RBP	40.7	■■■■■ 4.11
CAPN1-222	ENST00000532285	TARBP1	Q13395	1621 aa	Known RBP	40.67	■■■■■ 4.1
CAPN1-222	ENST00000532285	CUX1	P39880	1505 aa		40.67	■■■■■ 4.1
CAPN1-222	ENST00000532285	FGD5	Q6ZNL6	1462 aa		40.57	■■■■■ 4.08
CAPN1-222	ENST00000532285	EIF4G3	O43432	1585 aa	Known RBP	40.57	■■■■■ 4.08
CAPN1-222	ENST00000532285	SOGA1	O94964	1423 aa		40.55	■■■■■ 4.08
CAPN1-222	ENST00000532285	RAD54L2	Q9Y4B4	1467 aa		40.52	■■■■■ 4.08
CAPN1-222	ENST00000532285	AQR	O60306	1485 aa	Known RBP eCLIP	40.45	■■■■■ 4.07
CAPN1-222	ENST00000532285	OSCAR	Q8IYS5	282 aa		40.38	■■■■■ 4.05
CAPN1-222	ENST00000532285	WDR97	A6NE52	1622 aa		40.37	■■■■■ 4.05
CAPN1-222	ENST00000532285	TDRD9	Q8NDG6	1382 aa	Known RBP	40.33	■■■■■ 4.05
CAPN1-222	ENST00000532285	WRN	Q14191	1432 aa	Predicted RBP eCLIP	40.31	■■■■■ 4.04
CAPN1-222	ENST00000532285	BIVM-ERCC5	R4GMW8	1640 aa		40.3	■■■■■ 4.04
CAPN1-222	ENST00000532285	TOP2B	Q02880	1626 aa		40.28	■■■■■ 4.04
CAPN1-222	ENST00000532285	SYNJ1	O43426	1573 aa		40.23	■■■■■ 4.03
CAPN1-222	ENST00000532285	ABCA10	Q8WWZ4	1543 aa		40.18	■■■■■ 4.02
CAPN1-222	ENST00000532285	CHD1	O14646	1710 aa		40.15	■■■■■ 4.02
CAPN1-222	ENST00000532285	GRIN2B	Q13224	1484 aa		40.11	■■■■■ 4.01
CAPN1-222	ENST00000532285	GAPVD1	Q14C86	1478 aa		40.07	■■■■■ 4.01
CAPN1-222	ENST00000532285	PBRM1	Q86U86	1689 aa		40.07	■■■■■ 4
CAPN1-222	ENST00000532285	SNAPC4	Q5SXM2	1469 aa		40.07	■■■■■ 4
CAPN1-222	ENST00000532285	ABCA5	Q8WWZ7	1642 aa		40.05	■■■■■ 4
CAPN1-222	ENST00000532285	MAGI1	Q96QZ7	1491 aa	Predicted RBP	40.03	■■■■■ 4
CAPN1-222	ENST00000532285	FBLN2	P98095	1184 aa		40.03	■■■■■ 4
CAPN1-222	ENST00000532285	CHMP7	Q8WUX9	453 aa	Predicted RBP	39.89	■■■■□ 3.98
CAPN1-222	ENST00000532285	SYNJ2	O15056	1496 aa		39.88	■■■■□ 3.97
CAPN1-222	ENST00000532285	RIMBP3C	A6NJZ7	1639 aa		39.77	■■■■□ 3.96
CAPN1-222	ENST00000532285	RIMBP3B	A6NNM3	1639 aa		39.77	■■■■□ 3.96
CAPN1-222	ENST00000532285	RIMBP3	Q9UFD9	1639 aa		39.77	■■■■□ 3.96
CAPN1-222	ENST00000532285	ERICH3	Q5RHP9	1530 aa		39.71	■■■■□ 3.95
CAPN1-222	ENST00000532285	ARHGEF11	O15085	1522 aa		39.7	■■■■□ 3.95
CAPN1-222	ENST00000532285	TRIM41	Q8WV44	630 aa		39.69	■■■■□ 3.94
CAPN1-222	ENST00000532285	ADAMTS12	P58397	1594 aa		39.67	■■■■□ 3.94
CAPN1-222	ENST00000532285	CLASP1	Q7Z460	1538 aa		39.65	■■■■□ 3.94
CAPN1-222	ENST00000532285	FHAD1	B1AJZ9	1412 aa		39.6	■■■■□ 3.93
CAPN1-222	ENST00000532285	GRIN2A	Q12879	1464 aa		39.58	■■■■□ 3.93
CAPN1-222	ENST00000532285	KIF27	Q86VH2	1401 aa		39.49	■■■■□ 3.91
CAPN1-222	ENST00000532285	NUP160	Q12769	1436 aa		39.41	■■■■□ 3.9
CAPN1-222	ENST00000532285	CEP170	Q5SW79	1584 aa		39.4	■■■■□ 3.9
CAPN1-222	ENST00000532285	IGF1R	P08069	1367 aa		39.36	■■■■□ 3.89
CAPN1-222	ENST00000532285	ARAP1	Q96P48	1450 aa		39.36	■■■■□ 3.89
CAPN1-222	ENST00000532285	CYB5RL	Q6IPT4	315 aa		39.35	■■■■□ 3.89
CAPN1-222	ENST00000532285	CUL7	Q14999	1698 aa		39.32	■■■■□ 3.89
CAPN1-222	ENST00000532285	SHROOM2	Q13796	1616 aa		39.18	■■■■□ 3.86
CAPN1-222	ENST00000532285	CARMIL1	Q5VZK9	1371 aa		39.13	■■■■□ 3.85
CAPN1-222	ENST00000532285	RUSC2	Q8N2Y8	1516 aa		39.09	■■■■□ 3.85
CAPN1-222	ENST00000532285	ERCC6L2	Q5T890	1561 aa		39.07	■■■■□ 3.84

Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms