Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 MEG3_2.1-201ENST00000611456 105 ntBASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 AL021578.1-201ENST00000613646 709 ntBASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.15□□□□□ -0.15
TRIM39Q9HCM9 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
TRIM39Q9HCM9 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 RPS9P1-201ENST00000419943 583 ntBASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 KRT18P15-201ENST00000458108 1291 ntBASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 CHMP4BP1-201ENST00000556017 588 ntBASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 AC026803.1-201ENST00000569130 274 ntBASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 AC005562.1-201ENST00000583030 3219 ntBASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TRIM39Q9HCM9 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 HSPA7-201ENST00000445535 1927 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 Z82170.1-201ENST00000625081 3192 ntBASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TRIM39Q9HCM9 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms