Protein–RNA interactions for Protein: P10747

CD28, T-cell-specific surface glycoprotein CD28, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD28P10747 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC11.16□□□□□ -0.62
CD28P10747 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
CD28P10747 AC232323.1-201ENST00000540724 2099 ntBASIC11.16□□□□□ -0.62
CD28P10747 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 BRD7P5-201ENST00000299197 1822 ntBASIC11.16□□□□□ -0.62
CD28P10747 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
CD28P10747 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
CD28P10747 STK40-201ENST00000359297 4837 ntTSL 2 BASIC11.16□□□□□ -0.62
CD28P10747 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.16□□□□□ -0.62
CD28P10747 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.16□□□□□ -0.62
CD28P10747 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.16□□□□□ -0.62
CD28P10747 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CD28P10747 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC11.16□□□□□ -0.62
CD28P10747 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 MYADML-201ENST00000474610 2147 ntBASIC11.15□□□□□ -0.62
CD28P10747 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
CD28P10747 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 HIST2H2BA-201ENST00000412169 381 ntBASIC11.15□□□□□ -0.62
CD28P10747 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC11.15□□□□□ -0.62
CD28P10747 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 AC018463.1-201ENST00000456674 917 ntBASIC11.15□□□□□ -0.62
CD28P10747 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC11.15□□□□□ -0.62
CD28P10747 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC11.15□□□□□ -0.62
CD28P10747 SORD2P-201ENST00000558556 1069 ntBASIC11.15□□□□□ -0.62
CD28P10747 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC11.15□□□□□ -0.62
CD28P10747 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC11.15□□□□□ -0.62
CD28P10747 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 AC025262.2-201ENST00000623975 1056 ntBASIC11.15□□□□□ -0.62
CD28P10747 AL161773.1-201ENST00000624845 863 ntBASIC11.15□□□□□ -0.62
CD28P10747 CMC2-224ENST00000630396 481 ntTSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 AP001184.1-201ENST00000637936 376 ntBASIC11.15□□□□□ -0.62
CD28P10747 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.15□□□□□ -0.62
CD28P10747 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CD28P10747 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC11.15□□□□□ -0.62
CD28P10747 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.63
CD28P10747 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CD28P10747 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
CD28P10747 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
CD28P10747 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.63
CD28P10747 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.63
CD28P10747 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CD28P10747 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC11.14□□□□□ -0.63
CD28P10747 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CD28P10747 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC11.14□□□□□ -0.63
CD28P10747 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CD28P10747 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CD28P10747 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
CD28P10747 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CD28P10747 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC11.14□□□□□ -0.63
CD28P10747 AC215219.1-201ENST00000400706 1817 ntBASIC11.14□□□□□ -0.63
CD28P10747 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms