RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 DCAF8L2P0C7V8 631 aa24.21■■□□□ 1.47
GPC6-201ENST00000377047 NISCHQ9Y2I1 1504 aa22.67■■□□□ 1.22
GPC6-201ENST00000377047 SUPT5HO00267 1087 aaKnown RBP22.63■■□□□ 1.21
GPC6-201ENST00000377047 SHROOM4Q9ULL8 1493 aa22.34■■□□□ 1.17
GPC6-201ENST00000377047 EHMT2Q96KQ7 1210 aa22.1■■□□□ 1.13
GPC6-201ENST00000377047 APLP2Q06481 763 aa21.61■■□□□ 1.05
GPC6-201ENST00000377047 FAM9AQ8IZU1 332 aaPredicted RBP21.47■■□□□ 1.03
GPC6-201ENST00000377047 TTBK1Q5TCY1 1321 aaPredicted RBP21.3■■□□□ 1
GPC6-201ENST00000377047 RANGAP1P46060 587 aaPredicted RBP21.22■□□□□ 0.99
GPC6-201ENST00000377047 PELP1Q8IZL8 1130 aaKnown RBP21.1■□□□□ 0.97
GPC6-201ENST00000377047 ATP1B4Q9UN42 357 aaPredicted RBP21.07■□□□□ 0.96
GPC6-201ENST00000377047 TRIM41Q8WV44 630 aa20.94■□□□□ 0.94
GPC6-201ENST00000377047 PCGF6Q9BYE7 350 aa20.86■□□□□ 0.93
GPC6-201ENST00000377047 UBTFP17480 764 aaKnown RBP20.8■□□□□ 0.92
GPC6-201ENST00000377047 CCER1Q8TC90 406 aaPredicted RBP20.62■□□□□ 0.89
GPC6-201ENST00000377047 MYT1LQ9UL68 1186 aa20.41■□□□□ 0.86
GPC6-201ENST00000377047 ZEB1P37275 1124 aaPredicted RBP20.4■□□□□ 0.86
GPC6-201ENST00000377047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.36■□□□□ 0.85
GPC6-201ENST00000377047 HNRNPUL2Q1KMD3 747 aaKnown RBP20.36■□□□□ 0.85
GPC6-201ENST00000377047 PPARGC1BQ86YN6 1023 aaKnown RBP20.36■□□□□ 0.85
GPC6-201ENST00000377047 CENPBP07199 599 aaPredicted RBP20.33■□□□□ 0.84
GPC6-201ENST00000377047 ERICH6Q7L0X2 663 aa20.29■□□□□ 0.84
GPC6-201ENST00000377047 ITGAEP38570 1179 aa20.19■□□□□ 0.82
GPC6-201ENST00000377047 YTHDC1Q96MU7 727 aaKnown RBP20.12■□□□□ 0.81
GPC6-201ENST00000377047 NEFLP07196 543 aa20.1■□□□□ 0.81
GPC6-201ENST00000377047 POLR3GLQ9BT43 218 aa20.06■□□□□ 0.8
GPC6-201ENST00000377047 CHIC1Q5VXU3 224 aa20.06■□□□□ 0.8
GPC6-201ENST00000377047 ABCC9O60706 1549 aa20■□□□□ 0.79
GPC6-201ENST00000377047 PABPN1Q86U42 306 aaKnown RBP eCLIP19.98■□□□□ 0.79
GPC6-201ENST00000377047 TRIM26Q12899 539 aaPredicted RBP19.91■□□□□ 0.78
GPC6-201ENST00000377047 LOC105371045A0A1W2PR82 267 aa19.86■□□□□ 0.77
GPC6-201ENST00000377047 CNGB1Q14028 1251 aaPredicted RBP19.85■□□□□ 0.77
GPC6-201ENST00000377047 SLC4A1APQ9BWU0 796 aaKnown RBP19.82■□□□□ 0.76
GPC6-201ENST00000377047 FAM50AQ14320 339 aaKnown RBP19.67■□□□□ 0.74
GPC6-201ENST00000377047 FBLN2P98095 1184 aa19.65■□□□□ 0.74
GPC6-201ENST00000377047 DAXXQ9UER7 740 aaPredicted RBP19.58■□□□□ 0.73
GPC6-201ENST00000377047 TRIM52Q96A61 297 aa19.58■□□□□ 0.73
GPC6-201ENST00000377047 HRCP23327 699 aa19.53■□□□□ 0.72
GPC6-201ENST00000377047 NEUROD1Q13562 356 aa19.41■□□□□ 0.7
GPC6-201ENST00000377047 ZNF326Q5BKZ1 582 aaKnown RBP19.36■□□□□ 0.69
GPC6-201ENST00000377047 ARID3CA6NKF2 412 aa19.34■□□□□ 0.69
GPC6-201ENST00000377047 P3H3Q8IVL6 736 aa19.3■□□□□ 0.68
GPC6-201ENST00000377047 BCANQ96GW7 911 aa19.29■□□□□ 0.68
GPC6-201ENST00000377047 CLSPNQ9HAW4 1339 aa19.29■□□□□ 0.68
GPC6-201ENST00000377047 DIEXFQ68CQ4 756 aaKnown RBP19.18■□□□□ 0.66
GPC6-201ENST00000377047 ZNF777Q9ULD5 760 aaPredicted RBP19.17■□□□□ 0.66
GPC6-201ENST00000377047 SLC24A1O60721 1099 aa19.17■□□□□ 0.66
GPC6-201ENST00000377047 ZNF316A6NFI3 1004 aaPredicted RBP19.13■□□□□ 0.65
GPC6-201ENST00000377047 MYT1Q01538 1121 aa19.08■□□□□ 0.65
GPC6-201ENST00000377047 SCRIBQ14160 1630 aa19.08■□□□□ 0.64
GPC6-201ENST00000377047 ESF1Q9H501 851 aaKnown RBP19.07■□□□□ 0.64
GPC6-201ENST00000377047 ANP32CO43423 234 aa19.05■□□□□ 0.64
GPC6-201ENST00000377047 PLPPR3Q6T4P5 718 aa19.05■□□□□ 0.64
GPC6-201ENST00000377047 CSRNP3Q8WYN3 585 aa19.03■□□□□ 0.64
GPC6-201ENST00000377047 ZBTB47Q9UFB7 747 aaPredicted RBP19.03■□□□□ 0.64
GPC6-201ENST00000377047 CDK11AQ9UQ88 783 aaPredicted RBP19.03■□□□□ 0.64
GPC6-201ENST00000377047 BCL11AQ9H165 835 aa18.98■□□□□ 0.63
GPC6-201ENST00000377047 NEFMP07197 916 aa18.98■□□□□ 0.63
GPC6-201ENST00000377047 NPM1P06748 294 aaKnown RBP eCLIP18.98■□□□□ 0.63
GPC6-201ENST00000377047 CANXP27824 592 aaKnown RBP18.95■□□□□ 0.62
GPC6-201ENST00000377047 STAG3Q9UJ98 1225 aa18.94■□□□□ 0.62
GPC6-201ENST00000377047 CHGAP10645 457 aaKnown RBP18.93■□□□□ 0.62
GPC6-201ENST00000377047 RTL5Q5HYW3 569 aaPredicted RBP18.91■□□□□ 0.62
GPC6-201ENST00000377047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.75■□□□□ 0.59
GPC6-201ENST00000377047 CHMP7Q8WUX9 453 aaPredicted RBP18.72■□□□□ 0.59
GPC6-201ENST00000377047 CHIC2Q9UKJ5 165 aa18.69■□□□□ 0.58
GPC6-201ENST00000377047 TONSLQ96HA7 1378 aa18.68■□□□□ 0.58
GPC6-201ENST00000377047 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
GPC6-201ENST00000377047 GTF3C3Q9Y5Q9 886 aa18.6■□□□□ 0.57
GPC6-201ENST00000377047 TSPY4P0CV99 314 aa18.58■□□□□ 0.57
GPC6-201ENST00000377047 TSPY10P0CW01 314 aa18.58■□□□□ 0.57
GPC6-201ENST00000377047 SCAF1Q9H7N4 1312 aaKnown RBP18.58■□□□□ 0.56
GPC6-201ENST00000377047 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
GPC6-201ENST00000377047 CCDC180Q9P1Z9 1646 aa18.55■□□□□ 0.56
GPC6-201ENST00000377047 MTUS2Q5JR59 1369 aa18.53■□□□□ 0.56
GPC6-201ENST00000377047 KDM2AQ9Y2K7 1162 aa18.53■□□□□ 0.56
GPC6-201ENST00000377047 KCNH8Q96L42 1107 aa18.52■□□□□ 0.56
GPC6-201ENST00000377047 SENP3Q9H4L4 574 aaPredicted RBP18.52■□□□□ 0.55
GPC6-201ENST00000377047 SALL2Q9Y467 1007 aaPredicted RBP18.48■□□□□ 0.55
GPC6-201ENST00000377047 FAM9BQ8IZU0 186 aa18.46■□□□□ 0.55
GPC6-201ENST00000377047 A0A0G2JS52 829 aa18.45■□□□□ 0.54
GPC6-201ENST00000377047 PLEKHG5O94827 1062 aa18.44■□□□□ 0.54
GPC6-201ENST00000377047 NPM2Q86SE8 214 aaKnown RBP18.44■□□□□ 0.54
GPC6-201ENST00000377047 DDX10Q13206 875 aaKnown RBP18.43■□□□□ 0.54
GPC6-201ENST00000377047 ZBTB7CA1YPR0 619 aa18.43■□□□□ 0.54
GPC6-201ENST00000377047 PPP1R15AO75807 674 aaPredicted RBP18.42■□□□□ 0.54
GPC6-201ENST00000377047 HNRNPUQ00839 825 aaKnown RBP eCLIP18.4■□□□□ 0.54
GPC6-201ENST00000377047 ANP32AP39687 249 aaKnown RBP18.39■□□□□ 0.54
GPC6-201ENST00000377047 ARID4BQ4LE39 1312 aaPredicted RBP18.39■□□□□ 0.53
GPC6-201ENST00000377047 C14orf37Q86TY3 774 aa18.38■□□□□ 0.53
GPC6-201ENST00000377047 TMC1Q8TDI8 760 aa18.38■□□□□ 0.53
GPC6-201ENST00000377047 WDR43Q15061 677 aaKnown RBP eCLIP18.38■□□□□ 0.53
GPC6-201ENST00000377047 PLEKHD1A6NEE1 506 aa18.37■□□□□ 0.53
GPC6-201ENST00000377047 RRP7BPQ9NSQ0 103 aa18.37■□□□□ 0.53
GPC6-201ENST00000377047 CLIP1P30622 1438 aa18.34■□□□□ 0.53
GPC6-201ENST00000377047 ERCC6Q03468 1493 aa18.34■□□□□ 0.53
GPC6-201ENST00000377047 HSP90AA1P07900 732 aaKnown RBP18.33■□□□□ 0.53
GPC6-201ENST00000377047 BAZ1BQ9UIG0 1483 aaKnown RBP18.32■□□□□ 0.52
GPC6-201ENST00000377047 FKBP8Q14318 412 aa18.3■□□□□ 0.52
GPC6-201ENST00000377047 RSF1Q96T23 1441 aaPredicted RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms