Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
COL5A1P20908 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.31□□□□□ -0.28
COL5A1P20908 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 PGK1P2-201ENST00000431702 1214 ntBASIC13.31□□□□□ -0.28
COL5A1P20908 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC13.31□□□□□ -0.28
COL5A1P20908 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC13.31□□□□□ -0.28
COL5A1P20908 SRPK2P-201ENST00000523408 1100 ntBASIC13.31□□□□□ -0.28
COL5A1P20908 URB1-AS1-201ENST00000534991 831 ntBASIC13.31□□□□□ -0.28
COL5A1P20908 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC13.31□□□□□ -0.28
COL5A1P20908 AL357143.1-203ENST00000639750 881 ntBASIC13.31□□□□□ -0.28
COL5A1P20908 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
COL5A1P20908 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
COL5A1P20908 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.3□□□□□ -0.28
COL5A1P20908 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL5A1P20908 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 RPSAP6-201ENST00000417882 882 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC13.3□□□□□ -0.28
COL5A1P20908 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC13.3□□□□□ -0.28
COL5A1P20908 HNRNPA1P42-201ENST00000458678 957 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 RN7SL684P-201ENST00000465665 294 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 RPSAP70-201ENST00000504462 864 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC13.3□□□□□ -0.28
COL5A1P20908 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC13.3□□□□□ -0.28
COL5A1P20908 RN7SL605P-201ENST00000577229 281 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 MIR4254-201ENST00000581063 76 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 AC132812.1-201ENST00000583145 892 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 KF455155.1-201ENST00000604493 303 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 AC080013.5-201ENST00000607044 679 ntBASIC13.3□□□□□ -0.28
COL5A1P20908 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL5A1P20908 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL5A1P20908 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC13.3□□□□□ -0.28
COL5A1P20908 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC13.3□□□□□ -0.28
COL5A1P20908 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.3□□□□□ -0.28
COL5A1P20908 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
COL5A1P20908 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
COL5A1P20908 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL5A1P20908 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.3□□□□□ -0.28
COL5A1P20908 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
COL5A1P20908 MPV17-209ENST00000405983 859 ntTSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 AC041040.1-201ENST00000425197 460 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 GRAMD4P6-201ENST00000556999 244 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 BMF-206ENST00000558774 671 ntTSL 3 BASIC13.29□□□□□ -0.28
COL5A1P20908 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC13.29□□□□□ -0.28
COL5A1P20908 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 MEP1AP1-201ENST00000636082 1097 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms