Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD1Q96NR3 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD1Q96NR3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.28■■□□□ 1
PTCHD1Q96NR3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.28■■□□□ 1
PTCHD1Q96NR3 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD1Q96NR3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD1Q96NR3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD1Q96NR3 ABCB10P4-201ENST00000566803 2184 ntBASIC21.27■■□□□ 1
PTCHD1Q96NR3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PTCHD1Q96NR3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.27■■□□□ 1
PTCHD1Q96NR3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.27■■□□□ 1
PTCHD1Q96NR3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.27■■□□□ 1
PTCHD1Q96NR3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
PTCHD1Q96NR3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
PTCHD1Q96NR3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
PTCHD1Q96NR3 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PTCHD1Q96NR3 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD1Q96NR3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD1Q96NR3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 AC009102.2-201ENST00000606772 1639 ntBASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD1Q96NR3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.24■□□□□ 0.99
PTCHD1Q96NR3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD1Q96NR3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 SRD5A1P1-201ENST00000442297 786 ntBASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD1Q96NR3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD1Q96NR3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
PTCHD1Q96NR3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.21■□□□□ 0.99
PTCHD1Q96NR3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.21■□□□□ 0.99
PTCHD1Q96NR3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.21■□□□□ 0.99
PTCHD1Q96NR3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD1Q96NR3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD1Q96NR3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PTCHD1Q96NR3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD1Q96NR3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms