RNA–Protein interactions for RNA: ENST00000295549.8

LINC01116-201, Transcript of long intergenic non-protein coding RNA 1116, humanhuman

TSL 2 BASIC

Gene LINC01116, Length 1,407 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01116-201ENST00000295549 NISCHQ9Y2I1 1504 aa53.81■■■■■ 6.2
LINC01116-201ENST00000295549 CCDC180Q9P1Z9 1646 aa47.5■■■■■ 5.19
LINC01116-201ENST00000295549 ABCC9O60706 1549 aa45.96■■■■■ 4.95
LINC01116-201ENST00000295549 ZCCHC6Q5VYS8 1495 aaKnown RBP44.94■■■■■ 4.78
LINC01116-201ENST00000295549 DCAF8L2P0C7V8 631 aa44.73■■■■■ 4.75
LINC01116-201ENST00000295549 NACADO15069 1562 aa44.59■■■■■ 4.73
LINC01116-201ENST00000295549 DCAF1Q9Y4B6 1507 aa44.58■■■■■ 4.73
LINC01116-201ENST00000295549 MYO15BQ96JP2 1530 aa44.57■■■■■ 4.73
LINC01116-201ENST00000295549 RB1CC1Q8TDY2 1594 aa44.47■■■■■ 4.71
LINC01116-201ENST00000295549 SCRIBQ14160 1630 aa43.38■■■■■ 4.53
LINC01116-201ENST00000295549 UNC13AQ9UPW8 1703 aa43.35■■■■■ 4.53
LINC01116-201ENST00000295549 BICRAQ9NZM4 1560 aa43.1■■■■■ 4.49
LINC01116-201ENST00000295549 PABPN1Q86U42 306 aaKnown RBP eCLIP43.09■■■■■ 4.49
LINC01116-201ENST00000295549 SHROOM4Q9ULL8 1493 aa42.81■■■■■ 4.44
LINC01116-201ENST00000295549 EIF4G1Q04637 1599 aaKnown RBP41.92■■■■■ 4.3
LINC01116-201ENST00000295549 CECR2Q9BXF3 1484 aa41.84■■■■■ 4.29
LINC01116-201ENST00000295549 DNAJC5BQ9UF47 199 aa41.72■■■■■ 4.27
LINC01116-201ENST00000295549 BAZ1AQ9NRL2 1556 aaPredicted RBP41.65■■■■■ 4.26
LINC01116-201ENST00000295549 CC2D2AQ9P2K1 1620 aa41.59■■■■■ 4.25
LINC01116-201ENST00000295549 SMARCA4P51532 1647 aa41.57■■■■■ 4.25
LINC01116-201ENST00000295549 MROH2BQ7Z745 1585 aa41.45■■■■■ 4.23
LINC01116-201ENST00000295549 ATAD2BQ9ULI0 1458 aa41.27■■■■■ 4.2
LINC01116-201ENST00000295549 RSF1Q96T23 1441 aaPredicted RBP41.24■■■■■ 4.19
LINC01116-201ENST00000295549 SMARCA2P51531 1590 aa41.23■■■■■ 4.19
LINC01116-201ENST00000295549 PEG3Q9GZU2 1588 aa41.21■■■■■ 4.19
LINC01116-201ENST00000295549 NCAPD3P42695 1498 aa41.18■■■■■ 4.18
LINC01116-201ENST00000295549 WIZO95785 1651 aa40.99■■■■■ 4.15
LINC01116-201ENST00000295549 HMGXB3Q12766 1538 aa40.99■■■■■ 4.15
LINC01116-201ENST00000295549 BAZ1BQ9UIG0 1483 aaKnown RBP40.93■■■■■ 4.14
LINC01116-201ENST00000295549 TOP2AP11388 1531 aaKnown RBP40.63■■■■■ 4.1
LINC01116-201ENST00000295549 SUPT5HO00267 1087 aaKnown RBP40.61■■■■■ 4.09
LINC01116-201ENST00000295549 CCDC88BA6NC98 1476 aa40.19■■■■■ 4.02
LINC01116-201ENST00000295549 CADPSQ9ULU8 1353 aa40.02■■■■■ 4
LINC01116-201ENST00000295549 NESP48681 1621 aa39.95■■■■□ 3.99
LINC01116-201ENST00000295549 LAMC3Q9Y6N6 1575 aa39.94■■■■□ 3.98
LINC01116-201ENST00000295549 CFTRP13569 1480 aa39.89■■■■□ 3.98
LINC01116-201ENST00000295549 PDS5BQ9NTI5 1447 aa39.71■■■■□ 3.95
LINC01116-201ENST00000295549 ERCC6Q03468 1493 aa39.58■■■■□ 3.93
LINC01116-201ENST00000295549 FANCD2Q9BXW9 1451 aa39.51■■■■□ 3.92
LINC01116-201ENST00000295549 PRDM2Q13029 1718 aa39.47■■■■□ 3.91
LINC01116-201ENST00000295549 KIF21AQ7Z4S6 1674 aa39.41■■■■□ 3.9
LINC01116-201ENST00000295549 CEP164Q9UPV0 1460 aa39.4■■■■□ 3.9
LINC01116-201ENST00000295549 MRC2Q9UBG0 1479 aa39.23■■■■□ 3.87
LINC01116-201ENST00000295549 THOC2Q8NI27 1593 aaKnown RBP39.18■■■■□ 3.86
LINC01116-201ENST00000295549 WDR62O43379 1518 aa39.07■■■■□ 3.85
LINC01116-201ENST00000295549 URB2Q14146 1524 aaKnown RBP39.07■■■■□ 3.85
LINC01116-201ENST00000295549 ABCC8Q09428 1581 aa39■■■■□ 3.83
LINC01116-201ENST00000295549 CUX2O14529 1486 aa38.98■■■■□ 3.83
LINC01116-201ENST00000295549 TOPBP1Q92547 1522 aa38.94■■■■□ 3.82
LINC01116-201ENST00000295549 DNMBPQ6XZF7 1577 aa38.92■■■■□ 3.82
LINC01116-201ENST00000295549 WRNQ14191 1432 aaPredicted RBP eCLIP38.86■■■■□ 3.81
LINC01116-201ENST00000295549 CUX1P39880 1505 aa38.85■■■■□ 3.81
LINC01116-201ENST00000295549 TOP2BQ02880 1626 aa38.67■■■■□ 3.78
LINC01116-201ENST00000295549 SYNJ1O43426 1573 aa38.66■■■■□ 3.78
LINC01116-201ENST00000295549 POLA1P09884 1462 aaPredicted RBP38.66■■■■□ 3.78
LINC01116-201ENST00000295549 FGD5Q6ZNL6 1462 aa38.63■■■■□ 3.77
LINC01116-201ENST00000295549 BIVM-ERCC5R4GMW8 1640 aa38.63■■■■□ 3.77
LINC01116-201ENST00000295549 IFT140Q96RY7 1462 aa38.57■■■■□ 3.77
LINC01116-201ENST00000295549 SOGA1O94964 1423 aa38.53■■■■□ 3.76
LINC01116-201ENST00000295549 RAD54L2Q9Y4B4 1467 aa38.47■■■■□ 3.75
LINC01116-201ENST00000295549 TARBP1Q13395 1621 aaKnown RBP38.44■■■■□ 3.74
LINC01116-201ENST00000295549 TRIM41Q8WV44 630 aa38.37■■■■□ 3.73
LINC01116-201ENST00000295549 ABCA10Q8WWZ4 1543 aa38.32■■■■□ 3.73
LINC01116-201ENST00000295549 ZNF608Q9ULD9 1512 aaPredicted RBP38.32■■■■□ 3.73
LINC01116-201ENST00000295549 CHIC1Q5VXU3 224 aa38.29■■■■□ 3.72
LINC01116-201ENST00000295549 TDRD9Q8NDG6 1382 aaKnown RBP38.24■■■■□ 3.71
LINC01116-201ENST00000295549 WDR97A6NE52 1622 aa38.21■■■■□ 3.71
LINC01116-201ENST00000295549 AQRO60306 1485 aaKnown RBP eCLIP38.21■■■■□ 3.71
LINC01116-201ENST00000295549 EIF4G3O43432 1585 aaKnown RBP38.14■■■■□ 3.7
LINC01116-201ENST00000295549 GAPVD1Q14C86 1478 aa38.08■■■■□ 3.69
LINC01116-201ENST00000295549 ABCA5Q8WWZ7 1642 aa38.05■■■■□ 3.68
LINC01116-201ENST00000295549 KIF27Q86VH2 1401 aa38.01■■■■□ 3.68
LINC01116-201ENST00000295549 GRIN2BQ13224 1484 aa38■■■■□ 3.67
LINC01116-201ENST00000295549 ERICH3Q5RHP9 1530 aa37.86■■■■□ 3.65
LINC01116-201ENST00000295549 MAGI1Q96QZ7 1491 aaPredicted RBP37.84■■■■□ 3.65
LINC01116-201ENST00000295549 PBRM1Q86U86 1689 aa37.84■■■■□ 3.65
LINC01116-201ENST00000295549 SNAPC4Q5SXM2 1469 aa37.84■■■■□ 3.65
LINC01116-201ENST00000295549 IGF1RP08069 1367 aa37.82■■■■□ 3.64
LINC01116-201ENST00000295549 RUSC2Q8N2Y8 1516 aa37.8■■■■□ 3.64
LINC01116-201ENST00000295549 SYNJ2O15056 1496 aa37.69■■■■□ 3.62
LINC01116-201ENST00000295549 FHAD1B1AJZ9 1412 aa37.68■■■■□ 3.62
LINC01116-201ENST00000295549 EEA1Q15075 1411 aa37.68■■■■□ 3.62
LINC01116-201ENST00000295549 CHMP7Q8WUX9 453 aaPredicted RBP37.66■■■■□ 3.62
LINC01116-201ENST00000295549 ADAMTS12P58397 1594 aa37.64■■■■□ 3.62
LINC01116-201ENST00000295549 FBLN2P98095 1184 aa37.63■■■■□ 3.61
LINC01116-201ENST00000295549 CARMIL1Q5VZK9 1371 aa37.58■■■■□ 3.61
LINC01116-201ENST00000295549 CUL7Q14999 1698 aa37.57■■■■□ 3.61
LINC01116-201ENST00000295549 CSRNP3Q8WYN3 585 aa37.57■■■■□ 3.6
LINC01116-201ENST00000295549 OSCARQ8IYS5 282 aa37.53■■■■□ 3.6
LINC01116-201ENST00000295549 GRIN2AQ12879 1464 aa37.5■■■■□ 3.59
LINC01116-201ENST00000295549 FAM9AQ8IZU1 332 aaPredicted RBP37.5■■■■□ 3.59
LINC01116-201ENST00000295549 CHD1O14646 1710 aa37.5■■■■□ 3.59
LINC01116-201ENST00000295549 PRXQ9BXM0 1461 aa37.43■■■■□ 3.58
LINC01116-201ENST00000295549 RAPGEF2Q9Y4G8 1499 aa37.4■■■■□ 3.58
LINC01116-201ENST00000295549 NUP160Q12769 1436 aa37.34■■■■□ 3.57
LINC01116-201ENST00000295549 CEP170Q5SW79 1584 aa37.25■■■■□ 3.55
LINC01116-201ENST00000295549 CLASP1Q7Z460 1538 aa37.19■■■■□ 3.54
LINC01116-201ENST00000295549 KIF21BO75037 1637 aa37.17■■■■□ 3.54
LINC01116-201ENST00000295549 DNAJC5Q9H3Z4 198 aa37.15■■■■□ 3.54
LINC01116-201ENST00000295549 KIAA0586Q9BVV6 1533 aa37.13■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms