Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DDX49-204ENST00000595858 1882 ntTSL 1 (best)18.69■□□□□ 0.582e-6■□□□□ 8.6
YBX3P16989 DDX49-212ENST00000601803 1550 ntTSL 217.26■□□□□ 0.352e-6■□□□□ 8.6
YBX3P16989 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.98■□□□□ 0.312e-6■□□□□ 8.6
YBX3P16989 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.192e-6■□□□□ 8.6
YBX3P16989 DDX49-211ENST00000601772 342 ntTSL 312.07□□□□□ -0.482e-6■□□□□ 8.6
YBX3P16989 DCTN5-204ENST00000563998 878 ntTSL 3 BASIC14.19□□□□□ -0.142e-6■□□□□ 8.6
YBX3P16989 ERLIN2-208ENST00000521644 1602 ntTSL 522.39■■□□□ 1.182e-6■□□□□ 8.6
YBX3P16989 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.94■□□□□ 0.942e-6■□□□□ 8.6
YBX3P16989 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.69■□□□□ 0.262e-6■□□□□ 8.6
YBX3P16989 ERLIN2-204ENST00000518526 663 ntTSL 316.58■□□□□ 0.242e-6■□□□□ 8.6
YBX3P16989 ERLIN2-207ENST00000519872 550 ntTSL 416.45■□□□□ 0.222e-6■□□□□ 8.6
YBX3P16989 ERLIN2-203ENST00000397228 1473 ntTSL 1 (best) BASIC14.13□□□□□ -0.152e-6■□□□□ 8.6
YBX3P16989 ERLIN2-209ENST00000521993 764 ntTSL 313.97□□□□□ -0.172e-6■□□□□ 8.6
YBX3P16989 ERLIN2-210ENST00000523107 771 ntTSL 3 BASIC11.61□□□□□ -0.552e-6■□□□□ 8.6
YBX3P16989 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.44□□□□□ -1.222e-6■□□□□ 8.6
YBX3P16989 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.04■■■□□ 2.562e-6■□□□□ 8.6
YBX3P16989 SAMD1-201ENST00000269724 750 ntAPPRIS ALT2 TSL 524.51■■□□□ 1.512e-6■□□□□ 8.6
YBX3P16989 MICU1-209ENST00000604238 1268 ntTSL 516.61■□□□□ 0.259e-7■□□□□ 8.6
YBX3P16989 MYL4-205ENST00000570772 582 ntTSL 314.39□□□□□ -0.111e-9■□□□□ 8.6
YBX3P16989 MYL4-210ENST00000576874 641 ntTSL 314.39□□□□□ -0.111e-9■□□□□ 8.6
YBX3P16989 MYL4-207ENST00000572303 544 ntTSL 313.8□□□□□ -0.21e-9■□□□□ 8.6
YBX3P16989 MYL4-203ENST00000536623 650 ntTSL 513.35□□□□□ -0.271e-9■□□□□ 8.6
YBX3P16989 MYL4-209ENST00000573747 640 ntTSL 510.84□□□□□ -0.671e-9■□□□□ 8.6
YBX3P16989 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.081e-9■□□□□ 8.6
YBX3P16989 MCM2-205ENST00000473785 684 ntTSL 219.45■□□□□ 0.79e-9■□□□□ 8.6
YBX3P16989 PDAP1-204ENST00000496335 302 ntTSL 319.1■□□□□ 0.651e-9■□□□□ 8.6
YBX3P16989 TNPO2-217ENST00000590781 547 ntTSL 412.22□□□□□ -0.451e-9■□□□□ 8.6
YBX3P16989 AMD1-202ENST00000368877 1605 ntTSL 2 BASIC10.09□□□□□ -0.791e-9■□□□□ 8.6
YBX3P16989 YWHAZ-222ENST00000523848 664 ntTSL 56.09□□□□□ -1.431e-9■□□□□ 8.6
YBX3P16989 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC6.08□□□□□ -1.441e-9■□□□□ 8.6
YBX3P16989 SHMT2-220ENST00000555634 964 ntTSL 513.44□□□□□ -0.262e-9■□□□□ 8.6
YBX3P16989 BHLHE40-203ENST00000467610 1366 ntTSL 222.34■■□□□ 1.172e-19■□□□□ 8.6
YBX3P16989 BHLHE40-202ENST00000460806 396 ntTSL 28.85□□□□□ -0.992e-19■□□□□ 8.6
YBX3P16989 FSCN1-202ENST00000405801 550 ntTSL 425.07■■□□□ 1.61e-9■□□□□ 8.6
YBX3P16989 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.43■□□□□ 0.228e-9■□□□□ 8.6
YBX3P16989 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.088e-9■□□□□ 8.6
YBX3P16989 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.118e-9■□□□□ 8.6
YBX3P16989 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.348e-9■□□□□ 8.6
YBX3P16989 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.097e-7■□□□□ 8.6
YBX3P16989 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.337e-7■□□□□ 8.6
YBX3P16989 PTTG1IP-205ENST00000474737 580 ntTSL 321.68■■□□□ 1.066e-11■□□□□ 8.6
YBX3P16989 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC17.9■□□□□ 0.466e-11■□□□□ 8.6
YBX3P16989 PTTG1IP-207ENST00000494690 612 ntTSL 515.79■□□□□ 0.126e-11■□□□□ 8.6
YBX3P16989 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC26.31■■□□□ 1.87e-7■□□□□ 8.6
YBX3P16989 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.27e-7■□□□□ 8.6
YBX3P16989 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC22.22■■□□□ 1.153e-7■□□□□ 8.6
YBX3P16989 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC22.2■■□□□ 1.143e-7■□□□□ 8.6
YBX3P16989 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.84■□□□□ 0.773e-7■□□□□ 8.6
YBX3P16989 P4HB-208ENST00000473021 914 ntTSL 1 (best)19.45■□□□□ 0.73e-28■□□□□ 8.6
YBX3P16989 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.633e-7■□□□□ 8.6
YBX3P16989 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.293e-7■□□□□ 8.6
YBX3P16989 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.273e-7■□□□□ 8.6
YBX3P16989 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.173e-7■□□□□ 8.6
YBX3P16989 SLC13A3-201ENST00000279027 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.453e-7■□□□□ 8.6
YBX3P16989 SLC13A3-210ENST00000472148 3283 ntTSL 5 BASIC10.38□□□□□ -0.753e-7■□□□□ 8.6
YBX3P16989 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC8.57□□□□□ -1.043e-7■□□□□ 8.6
YBX3P16989 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.26■■■□□ 2.114e-8■□□□□ 8.6
YBX3P16989 UBE2D3-216ENST00000503742 1977 ntTSL 1 (best)23.61■■□□□ 1.374e-8■□□□□ 8.6
YBX3P16989 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC16.77■□□□□ 0.284e-8■□□□□ 8.6
YBX3P16989 UBE2D3-211ENST00000502404 574 ntTSL 4 BASIC15.23■□□□□ 0.034e-8■□□□□ 8.6
YBX3P16989 UBE2D3-219ENST00000505207 527 ntTSL 5 BASIC15.23■□□□□ 0.034e-8■□□□□ 8.6
YBX3P16989 UBE2D3-206ENST00000357194 660 ntTSL 2 BASIC14.32□□□□□ -0.124e-8■□□□□ 8.6
YBX3P16989 UBE2D3-205ENST00000350435 711 ntTSL 2 BASIC14.13□□□□□ -0.154e-8■□□□□ 8.6
YBX3P16989 UBE2D3-202ENST00000338145 896 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.294e-8■□□□□ 8.6
YBX3P16989 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC8.45□□□□□ -1.064e-8■□□□□ 8.6
YBX3P16989 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC8.25□□□□□ -1.094e-8■□□□□ 8.6
YBX3P16989 UBE2D3-218ENST00000505009 440 ntTSL 27.85□□□□□ -1.154e-8■□□□□ 8.6
YBX3P16989 UBE2D3-226ENST00000508635 587 ntTSL 45.74□□□□□ -1.494e-8■□□□□ 8.6
YBX3P16989 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.691e-6■□□□□ 8.6
YBX3P16989 NIPSNAP1-202ENST00000415100 661 ntTSL 530.64■■■□□ 2.55e-7■□□□□ 8.6
YBX3P16989 NIPSNAP1-203ENST00000437094 674 ntTSL 315.99■□□□□ 0.155e-7■□□□□ 8.6
YBX3P16989 NIPSNAP1-204ENST00000455496 600 ntTSL 314.51□□□□□ -0.095e-7■□□□□ 8.6
YBX3P16989 SNAP23-205ENST00000563333 862 ntTSL 26.22□□□□□ -1.415e-7■□□□□ 8.6
YBX3P16989 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.462e-8■□□□□ 8.6
YBX3P16989 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.02■□□□□ 0.322e-8■□□□□ 8.6
YBX3P16989 NQO2-207ENST00000397717 833 ntTSL 522.48■■□□□ 1.194e-8■□□□□ 8.6
YBX3P16989 TBX1-204ENST00000475303 546 ntTSL 217.48■□□□□ 0.393e-8■□□□□ 8.6
YBX3P16989 NQO2-206ENST00000380472 689 ntTSL 515.91■□□□□ 0.144e-8■□□□□ 8.6
YBX3P16989 NQO2-209ENST00000606474 470 ntTSL 3 BASIC10.1□□□□□ -0.794e-8■□□□□ 8.6
YBX3P16989 NQO2-208ENST00000426637 626 ntTSL 59.57□□□□□ -0.884e-8■□□□□ 8.6
YBX3P16989 CNOT1-209ENST00000566240 567 ntTSL 46.7□□□□□ -1.343e-8■□□□□ 8.6
YBX3P16989 PSMD7-202ENST00000563150 724 ntTSL 28.08□□□□□ -1.121e-13■□□□□ 8.6
YBX3P16989 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC9.51□□□□□ -0.893e-23■□□□□ 8.6
YBX3P16989 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.51■■■□□ 2.471e-13■□□□□ 8.6
YBX3P16989 NAXE-204ENST00000467374 779 ntTSL 216.04■□□□□ 0.161e-13■□□□□ 8.6
YBX3P16989 TYW3-205ENST00000479111 1130 ntTSL 3 BASIC12.25□□□□□ -0.454e-8■□□□□ 8.6
YBX3P16989 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.344e-8■□□□□ 8.6
YBX3P16989 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.25□□□□□ -1.414e-8■□□□□ 8.6
YBX3P16989 YIPF6-203ENST00000451537 1070 ntTSL 227.72■■■□□ 2.035e-8■□□□□ 8.6
YBX3P16989 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.235e-8■□□□□ 8.6
YBX3P16989 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC13.47□□□□□ -0.255e-8■□□□□ 8.6
YBX3P16989 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.021e-323■□□□□ 8.6
YBX3P16989 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.091e-323■□□□□ 8.6
YBX3P16989 EEF1A1-201ENST00000309268 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.161e-323■□□□□ 8.6
YBX3P16989 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.411e-8■□□□□ 8.6
YBX3P16989 EEF1A1-207ENST00000490569 1802 ntTSL 58.24□□□□□ -1.091e-323■□□□□ 8.6
YBX3P16989 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.91□□□□□ -1.461e-323■□□□□ 8.6
YBX3P16989 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.96□□□□□ -1.621e-323■□□□□ 8.6
YBX3P16989 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.166e-7■□□□□ 8.6
YBX3P16989 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)19.84■□□□□ 0.776e-7■□□□□ 8.6
Retrieved 100 of 29,075 protein–RNA pairs in 598.6 ms