RNA–Protein interactions for RNA: ENST00000566240.1

CNOT1-209, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 4

Gene CNOT1, Length 567 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-209ENST00000566240 AEBP2Q6ZN18 517 aaPredicted RBP22.81■■□□□ 1.24
CNOT1-209ENST00000566240 CHIC1Q5VXU3 224 aa21.49■■□□□ 1.03
CNOT1-209ENST00000566240 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
CNOT1-209ENST00000566240 PHF23Q9BUL5 403 aaPredicted RBP19.16■□□□□ 0.66
CNOT1-209ENST00000566240 FOXD1Q16676 465 aa18.15■□□□□ 0.5
CNOT1-209ENST00000566240 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
CNOT1-209ENST00000566240 MSH5O43196 834 aa16.99■□□□□ 0.31
CNOT1-209ENST00000566240 PIAS4Q8N2W9 510 aaPredicted RBP16.92■□□□□ 0.3
CNOT1-209ENST00000566240 PPP6R1Q9UPN7 881 aa16.88■□□□□ 0.29
CNOT1-209ENST00000566240 POTEDQ86YR6 584 aa16.85■□□□□ 0.29
CNOT1-209ENST00000566240 ADRA2BP18089 450 aa16.81■□□□□ 0.28
CNOT1-209ENST00000566240 MAPK8IP2Q13387 824 aaPredicted RBP15.49■□□□□ 0.07
CNOT1-209ENST00000566240 DMRT2Q9Y5R5 561 aa15.39■□□□□ 0.05
CNOT1-209ENST00000566240 SCAF1Q9H7N4 1312 aaKnown RBP15.3■□□□□ 0.04
CNOT1-209ENST00000566240 KCNA4P22459 653 aa15.11■□□□□ 0.01
CNOT1-209ENST00000566240 PPP4R3CPQ6ZMV5 832 aa14.98□□□□□ -0.01
CNOT1-209ENST00000566240 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
CNOT1-209ENST00000566240 DCAF8L1A6NGE4 600 aa14.77□□□□□ -0.05
CNOT1-209ENST00000566240 HOXD11P31277 338 aaPredicted RBP14.77□□□□□ -0.05
CNOT1-209ENST00000566240 CNKSR2Q8WXI2 1034 aa14.71□□□□□ -0.05
CNOT1-209ENST00000566240 CACNB1Q02641 598 aaPredicted RBP14.68□□□□□ -0.06
CNOT1-209ENST00000566240 RNF216Q9NWF9 866 aaPredicted RBP14.61□□□□□ -0.07
CNOT1-209ENST00000566240 NCBP3Q53F19 620 aaKnown RBP14.57□□□□□ -0.08
CNOT1-209ENST00000566240 RNF39Q9H2S5 420 aa14.52□□□□□ -0.09
CNOT1-209ENST00000566240 SLC4A1APQ9BWU0 796 aaKnown RBP14.5□□□□□ -0.09
CNOT1-209ENST00000566240 NPM3O75607 178 aaKnown RBP14.35□□□□□ -0.11
CNOT1-209ENST00000566240 CSRNP3Q8WYN3 585 aa14.35□□□□□ -0.11
CNOT1-209ENST00000566240 C1QBPQ07021 282 aaKnown RBP14.26□□□□□ -0.13
CNOT1-209ENST00000566240 DNAJC5BQ9UF47 199 aa14.24□□□□□ -0.13
CNOT1-209ENST00000566240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.07□□□□□ -0.16
CNOT1-209ENST00000566240 ZBTB22O15209 634 aa13.92□□□□□ -0.18
CNOT1-209ENST00000566240 U3KPZ7 1027 aaPredicted RBP13.79□□□□□ -0.2
CNOT1-209ENST00000566240 FOXD4L1Q9NU39 408 aa13.73□□□□□ -0.21
CNOT1-209ENST00000566240 SPINK5Q9NQ38 1064 aaPredicted RBP13.63□□□□□ -0.23
CNOT1-209ENST00000566240 CAPN15O75808 1086 aa13.59□□□□□ -0.23
CNOT1-209ENST00000566240 SLC4A2P04920 1241 aa13.58□□□□□ -0.24
CNOT1-209ENST00000566240 DSG3P32926 999 aa13.55□□□□□ -0.24
CNOT1-209ENST00000566240 TRHP20396 242 aaPredicted RBP13.34□□□□□ -0.27
CNOT1-209ENST00000566240 APLP2Q06481 763 aa13.31□□□□□ -0.28
CNOT1-209ENST00000566240 ABCB7O75027 752 aa13.3□□□□□ -0.28
CNOT1-209ENST00000566240 ZNF219Q9P2Y4 722 aaPredicted RBP13.29□□□□□ -0.28
CNOT1-209ENST00000566240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.27□□□□□ -0.29
CNOT1-209ENST00000566240 HNRNPUL2Q1KMD3 747 aaKnown RBP13.27□□□□□ -0.29
CNOT1-209ENST00000566240 MYCNP04198 464 aaPredicted RBP13.23□□□□□ -0.29
CNOT1-209ENST00000566240 SAMD1Q6SPF0 538 aaPredicted RBP13.22□□□□□ -0.29
CNOT1-209ENST00000566240 ATXN8OSP0DMR3 200 aa13.21□□□□□ -0.29
CNOT1-209ENST00000566240 POTEHQ6S545 545 aa13.17□□□□□ -0.3
CNOT1-209ENST00000566240 POLA2Q14181 598 aa12.94□□□□□ -0.34
CNOT1-209ENST00000566240 FKBP8Q14318 412 aa12.92□□□□□ -0.34
CNOT1-209ENST00000566240 RBM42Q9BTD8 480 aaKnown RBP12.89□□□□□ -0.35
CNOT1-209ENST00000566240 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
CNOT1-209ENST00000566240 AMER1Q5JTC6 1135 aaPredicted RBP12.83□□□□□ -0.36
CNOT1-209ENST00000566240 RTN4Q9NQC3 1192 aaKnown RBP12.83□□□□□ -0.36
CNOT1-209ENST00000566240 CHRDL2Q6WN34 429 aa12.7□□□□□ -0.38
CNOT1-209ENST00000566240 ZBTB12Q9Y330 459 aaPredicted RBP12.65□□□□□ -0.38
CNOT1-209ENST00000566240 OSCARQ8IYS5 282 aa12.58□□□□□ -0.4
CNOT1-209ENST00000566240 AKT1S1Q96B36 256 aa12.58□□□□□ -0.4
CNOT1-209ENST00000566240 SLC24A1O60721 1099 aa12.57□□□□□ -0.4
CNOT1-209ENST00000566240 REM2Q8IYK8 340 aaPredicted RBP12.48□□□□□ -0.41
CNOT1-209ENST00000566240 PITPNM1O00562 1244 aa12.38□□□□□ -0.43
CNOT1-209ENST00000566240 PIP4P2Q8N4L2 257 aa12.38□□□□□ -0.43
CNOT1-209ENST00000566240 SPDYE4A6NLX3 237 aa12.34□□□□□ -0.43
CNOT1-209ENST00000566240 MKRN4PQ13434 485 aaPredicted RBP12.32□□□□□ -0.44
CNOT1-209ENST00000566240 FBXO3Q9UK99 471 aa12.3□□□□□ -0.44
CNOT1-209ENST00000566240 FBLN2P98095 1184 aa12.28□□□□□ -0.44
CNOT1-209ENST00000566240 SP7Q8TDD2 431 aaPredicted RBP12.28□□□□□ -0.44
CNOT1-209ENST00000566240 SPDYE2BA6NHP3 402 aa12.27□□□□□ -0.45
CNOT1-209ENST00000566240 SPDYE6P0CI01 402 aa12.27□□□□□ -0.45
CNOT1-209ENST00000566240 FXR2P51116 673 aaKnown RBP eCLIP12.27□□□□□ -0.456e-7■■■■□ 23.6
CNOT1-209ENST00000566240 SPDYE2Q495Y8 402 aa12.27□□□□□ -0.45
CNOT1-209ENST00000566240 PROM2Q8N271 834 aa12.21□□□□□ -0.45
CNOT1-209ENST00000566240 HAX1O00165 279 aa12.16□□□□□ -0.46
CNOT1-209ENST00000566240 VASPP50552 380 aaPredicted RBP12.11□□□□□ -0.47
CNOT1-209ENST00000566240 SSUH2Q9Y2M2 353 aa12.11□□□□□ -0.47
CNOT1-209ENST00000566240 ZNF692Q9BU19 519 aaPredicted RBP12.09□□□□□ -0.47
CNOT1-209ENST00000566240 SPDYE1Q8NFV5 336 aaPredicted RBP12.07□□□□□ -0.48
CNOT1-209ENST00000566240 CLEC11AQ9Y240 323 aa12.07□□□□□ -0.48
CNOT1-209ENST00000566240 EVX2Q03828 476 aa12.05□□□□□ -0.48
CNOT1-209ENST00000566240 PRKAR2AP13861 404 aaKnown RBP12.03□□□□□ -0.48
CNOT1-209ENST00000566240 IFNLR1Q8IU57 520 aaPredicted RBP12.01□□□□□ -0.49
CNOT1-209ENST00000566240 PABPN1Q86U42 306 aaKnown RBP eCLIP11.93□□□□□ -0.5
CNOT1-209ENST00000566240 CHADLQ6NUI6 762 aa11.9□□□□□ -0.5
CNOT1-209ENST00000566240 C19orf67A6NJJ6 358 aa11.89□□□□□ -0.51
CNOT1-209ENST00000566240 PRR29P0C7W0 189 aa11.84□□□□□ -0.51
CNOT1-209ENST00000566240 PLCB2Q00722 1185 aa11.84□□□□□ -0.51
CNOT1-209ENST00000566240 PKD2Q13563 968 aa11.84□□□□□ -0.51
CNOT1-209ENST00000566240 DCAF8L2P0C7V8 631 aa11.82□□□□□ -0.52
CNOT1-209ENST00000566240 KLHL34Q8N239 644 aa11.78□□□□□ -0.52
CNOT1-209ENST00000566240 STAG3Q9UJ98 1225 aa11.78□□□□□ -0.52
CNOT1-209ENST00000566240 SPOCK2Q92563 424 aa11.76□□□□□ -0.53
CNOT1-209ENST00000566240 GABBR2O75899 941 aa11.74□□□□□ -0.53
CNOT1-209ENST00000566240 PLCD3Q8N3E9 789 aa11.69□□□□□ -0.54
CNOT1-209ENST00000566240 HAP1P54257 671 aaPredicted RBP11.68□□□□□ -0.54
CNOT1-209ENST00000566240 FARP1Q9Y4F1 1045 aaPredicted RBP11.68□□□□□ -0.54
CNOT1-209ENST00000566240 ECM2O94769 699 aaPredicted RBP11.65□□□□□ -0.54
CNOT1-209ENST00000566240 CD44P16070 742 aaKnown RBP11.65□□□□□ -0.54
CNOT1-209ENST00000566240 MIER1Q8N108 512 aa11.65□□□□□ -0.54
CNOT1-209ENST00000566240 BBXQ8WY36 941 aaPredicted RBP11.56□□□□□ -0.56
CNOT1-209ENST00000566240 CREBZFQ9NS37 354 aa11.56□□□□□ -0.56
CNOT1-209ENST00000566240 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms