RNA–Protein interactions for RNA: ENST00000496335.1

PDAP1-204, Transcript of PDGFA associated protein 1, humanhuman

TSL 3

Gene PDAP1, Length 302 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDAP1-204ENST00000496335 NISCHQ9Y2I1 1504 aa35.52■■■■□ 3.28
PDAP1-204ENST00000496335 CCDC180Q9P1Z9 1646 aa31.64■■■□□ 2.65
PDAP1-204ENST00000496335 ABCC9O60706 1549 aa31.24■■■□□ 2.59
PDAP1-204ENST00000496335 RB1CC1Q8TDY2 1594 aa29.9■■■□□ 2.38
PDAP1-204ENST00000496335 DCAF8L2P0C7V8 631 aa29.86■■■□□ 2.37
PDAP1-204ENST00000496335 NACADO15069 1562 aa29.8■■■□□ 2.36
PDAP1-204ENST00000496335 ZCCHC6Q5VYS8 1495 aaKnown RBP29.53■■■□□ 2.32
PDAP1-204ENST00000496335 MYO15BQ96JP2 1530 aa29.51■■■□□ 2.32
PDAP1-204ENST00000496335 DCAF1Q9Y4B6 1507 aa29.32■■■□□ 2.28
PDAP1-204ENST00000496335 UNC13AQ9UPW8 1703 aa29.28■■■□□ 2.28
PDAP1-204ENST00000496335 PABPN1Q86U42 306 aaKnown RBP eCLIP29.2■■■□□ 2.263e-10■□□□□ 10.9
PDAP1-204ENST00000496335 BICRAQ9NZM4 1560 aa29.04■■■□□ 2.24
PDAP1-204ENST00000496335 SCRIBQ14160 1630 aa28.92■■■□□ 2.22
PDAP1-204ENST00000496335 DNAJC5BQ9UF47 199 aa28.92■■■□□ 2.22
PDAP1-204ENST00000496335 SHROOM4Q9ULL8 1493 aa28.6■■■□□ 2.17
PDAP1-204ENST00000496335 EIF4G1Q04637 1599 aaKnown RBP28.27■■■□□ 2.12
PDAP1-204ENST00000496335 CC2D2AQ9P2K1 1620 aa28.23■■■□□ 2.11
PDAP1-204ENST00000496335 CECR2Q9BXF3 1484 aa28.07■■■□□ 2.08
PDAP1-204ENST00000496335 SMARCA4P51532 1647 aa27.61■■■□□ 2.01
PDAP1-204ENST00000496335 BAZ1AQ9NRL2 1556 aaPredicted RBP27.52■■■□□ 2
PDAP1-204ENST00000496335 ATAD2BQ9ULI0 1458 aa27.51■■■□□ 2
PDAP1-204ENST00000496335 NCAPD3P42695 1498 aa27.51■■□□□ 1.99
PDAP1-204ENST00000496335 SMARCA2P51531 1590 aa27.43■■□□□ 1.98
PDAP1-204ENST00000496335 MROH2BQ7Z745 1585 aa27.4■■□□□ 1.98
PDAP1-204ENST00000496335 HMGXB3Q12766 1538 aa27.34■■□□□ 1.97
PDAP1-204ENST00000496335 PEG3Q9GZU2 1588 aa27.31■■□□□ 1.96
PDAP1-204ENST00000496335 BAZ1BQ9UIG0 1483 aaKnown RBP27.27■■□□□ 1.96
PDAP1-204ENST00000496335 WIZO95785 1651 aa27.11■■□□□ 1.93
PDAP1-204ENST00000496335 RSF1Q96T23 1441 aaPredicted RBP27■■□□□ 1.91
PDAP1-204ENST00000496335 NESP48681 1621 aa26.99■■□□□ 1.91
PDAP1-204ENST00000496335 ERCC6Q03468 1493 aa26.91■■□□□ 1.9
PDAP1-204ENST00000496335 LAMC3Q9Y6N6 1575 aa26.81■■□□□ 1.88
PDAP1-204ENST00000496335 TOP2AP11388 1531 aaKnown RBP26.75■■□□□ 1.87
PDAP1-204ENST00000496335 CADPSQ9ULU8 1353 aa26.71■■□□□ 1.87
PDAP1-204ENST00000496335 CUX2O14529 1486 aa26.66■■□□□ 1.86
PDAP1-204ENST00000496335 KIF21AQ7Z4S6 1674 aa26.65■■□□□ 1.86
PDAP1-204ENST00000496335 PDS5BQ9NTI5 1447 aa26.65■■□□□ 1.86
PDAP1-204ENST00000496335 THOC2Q8NI27 1593 aaKnown RBP26.57■■□□□ 1.84
PDAP1-204ENST00000496335 CFTRP13569 1480 aa26.49■■□□□ 1.83
PDAP1-204ENST00000496335 CCDC88BA6NC98 1476 aa26.49■■□□□ 1.83
PDAP1-204ENST00000496335 FANCD2Q9BXW9 1451 aa26.42■■□□□ 1.82
PDAP1-204ENST00000496335 MRC2Q9UBG0 1479 aa26.39■■□□□ 1.82
PDAP1-204ENST00000496335 CEP164Q9UPV0 1460 aa26.39■■□□□ 1.82
PDAP1-204ENST00000496335 WDR62O43379 1518 aa26.3■■□□□ 1.8
PDAP1-204ENST00000496335 PRDM2Q13029 1718 aa26.29■■□□□ 1.8
PDAP1-204ENST00000496335 SUPT5HO00267 1087 aaKnown RBP26.23■■□□□ 1.79
PDAP1-204ENST00000496335 URB2Q14146 1524 aaKnown RBP26.19■■□□□ 1.78
PDAP1-204ENST00000496335 DNAJC5Q9H3Z4 198 aa26.15■■□□□ 1.78
PDAP1-204ENST00000496335 TOPBP1Q92547 1522 aa25.98■■□□□ 1.75
PDAP1-204ENST00000496335 ABCC8Q09428 1581 aa25.9■■□□□ 1.74
PDAP1-204ENST00000496335 DNMBPQ6XZF7 1577 aa25.9■■□□□ 1.74
PDAP1-204ENST00000496335 IFT140Q96RY7 1462 aa25.83■■□□□ 1.73
PDAP1-204ENST00000496335 ZNF608Q9ULD9 1512 aaPredicted RBP25.79■■□□□ 1.72
PDAP1-204ENST00000496335 POLA1P09884 1462 aaPredicted RBP25.74■■□□□ 1.71
PDAP1-204ENST00000496335 CUX1P39880 1505 aa25.71■■□□□ 1.71
PDAP1-204ENST00000496335 TARBP1Q13395 1621 aaKnown RBP25.7■■□□□ 1.71
PDAP1-204ENST00000496335 RAD54L2Q9Y4B4 1467 aa25.66■■□□□ 1.7
PDAP1-204ENST00000496335 FGD5Q6ZNL6 1462 aa25.66■■□□□ 1.7
PDAP1-204ENST00000496335 EIF4G3O43432 1585 aaKnown RBP25.65■■□□□ 1.7
PDAP1-204ENST00000496335 SOGA1O94964 1423 aa25.63■■□□□ 1.69
PDAP1-204ENST00000496335 AQRO60306 1485 aaKnown RBP eCLIP25.63■■□□□ 1.691e-6■■■■■ 43
PDAP1-204ENST00000496335 OSCARQ8IYS5 282 aa25.57■■□□□ 1.68
PDAP1-204ENST00000496335 TDRD9Q8NDG6 1382 aaKnown RBP25.55■■□□□ 1.68
PDAP1-204ENST00000496335 WRNQ14191 1432 aaPredicted RBP eCLIP25.45■■□□□ 1.66
PDAP1-204ENST00000496335 WDR97A6NE52 1622 aa25.43■■□□□ 1.66
PDAP1-204ENST00000496335 SYNJ1O43426 1573 aa25.43■■□□□ 1.66
PDAP1-204ENST00000496335 TOP2BQ02880 1626 aa25.41■■□□□ 1.66
PDAP1-204ENST00000496335 BIVM-ERCC5R4GMW8 1640 aa25.41■■□□□ 1.66
PDAP1-204ENST00000496335 CHD1O14646 1710 aa25.4■■□□□ 1.66
PDAP1-204ENST00000496335 FBLN2P98095 1184 aa25.38■■□□□ 1.65
PDAP1-204ENST00000496335 ABCA10Q8WWZ4 1543 aa25.37■■□□□ 1.65
PDAP1-204ENST00000496335 SNAPC4Q5SXM2 1469 aa25.35■■□□□ 1.65
PDAP1-204ENST00000496335 GRIN2BQ13224 1484 aa25.34■■□□□ 1.65
PDAP1-204ENST00000496335 GAPVD1Q14C86 1478 aa25.32■■□□□ 1.64
PDAP1-204ENST00000496335 ABCA5Q8WWZ7 1642 aa25.3■■□□□ 1.64
PDAP1-204ENST00000496335 PBRM1Q86U86 1689 aa25.29■■□□□ 1.64
PDAP1-204ENST00000496335 MAGI1Q96QZ7 1491 aaPredicted RBP25.28■■□□□ 1.64
PDAP1-204ENST00000496335 TRIM41Q8WV44 630 aa25.25■■□□□ 1.63
PDAP1-204ENST00000496335 CHMP7Q8WUX9 453 aaPredicted RBP25.24■■□□□ 1.63
PDAP1-204ENST00000496335 SYNJ2O15056 1496 aa25.2■■□□□ 1.62
PDAP1-204ENST00000496335 RIMBP3CA6NJZ7 1639 aa25.19■■□□□ 1.62
PDAP1-204ENST00000496335 RIMBP3BA6NNM3 1639 aa25.19■■□□□ 1.62
PDAP1-204ENST00000496335 RIMBP3Q9UFD9 1639 aa25.19■■□□□ 1.62
PDAP1-204ENST00000496335 ARHGEF11O15085 1522 aa25.15■■□□□ 1.62
PDAP1-204ENST00000496335 CLASP1Q7Z460 1538 aa25.08■■□□□ 1.61
PDAP1-204ENST00000496335 ADAMTS12P58397 1594 aa25.06■■□□□ 1.6
PDAP1-204ENST00000496335 ERICH3Q5RHP9 1530 aa25.05■■□□□ 1.6
PDAP1-204ENST00000496335 GRIN2AQ12879 1464 aa25.02■■□□□ 1.6
PDAP1-204ENST00000496335 FHAD1B1AJZ9 1412 aa25.01■■□□□ 1.59
PDAP1-204ENST00000496335 CYB5RLQ6IPT4 315 aa24.97■■□□□ 1.59
PDAP1-204ENST00000496335 ARAP1Q96P48 1450 aa24.94■■□□□ 1.58
PDAP1-204ENST00000496335 CEP170Q5SW79 1584 aa24.93■■□□□ 1.58
PDAP1-204ENST00000496335 KIF27Q86VH2 1401 aa24.92■■□□□ 1.58
PDAP1-204ENST00000496335 NUP160Q12769 1436 aa24.91■■□□□ 1.58
PDAP1-204ENST00000496335 IGF1RP08069 1367 aa24.88■■□□□ 1.57
PDAP1-204ENST00000496335 CUL7Q14999 1698 aa24.78■■□□□ 1.56
PDAP1-204ENST00000496335 ERCC6L2Q5T890 1561 aa24.78■■□□□ 1.56
PDAP1-204ENST00000496335 SHROOM2Q13796 1616 aa24.75■■□□□ 1.55
PDAP1-204ENST00000496335 CARMIL1Q5VZK9 1371 aa24.72■■□□□ 1.55
PDAP1-204ENST00000496335 RUSC2Q8N2Y8 1516 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms