RNA–Protein interactions for RNA: ENST00000505009.5

UBE2D3-218, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-218ENST00000505009 AEBP2Q6ZN18 517 aaPredicted RBP29.07■■■□□ 2.24
UBE2D3-218ENST00000505009 CHIC1Q5VXU3 224 aa28.05■■■□□ 2.08
UBE2D3-218ENST00000505009 PHF23Q9BUL5 403 aaPredicted RBP24.72■■□□□ 1.55
UBE2D3-218ENST00000505009 SENP3Q9H4L4 574 aaPredicted RBP24.58■■□□□ 1.53
UBE2D3-218ENST00000505009 FOXD1Q16676 465 aa22.94■■□□□ 1.26
UBE2D3-218ENST00000505009 PLPPR3Q6T4P5 718 aa22.62■■□□□ 1.21
UBE2D3-218ENST00000505009 PPP6R1Q9UPN7 881 aa21.92■■□□□ 1.1
UBE2D3-218ENST00000505009 ADRA2BP18089 450 aa21.87■■□□□ 1.09
UBE2D3-218ENST00000505009 PIAS4Q8N2W9 510 aaPredicted RBP21.54■■□□□ 1.04
UBE2D3-218ENST00000505009 MSH5O43196 834 aa21.15■□□□□ 0.98
UBE2D3-218ENST00000505009 PPP4R3CPQ6ZMV5 832 aa19.95■□□□□ 0.78
UBE2D3-218ENST00000505009 MAPK8IP2Q13387 824 aaPredicted RBP19.94■□□□□ 0.78
UBE2D3-218ENST00000505009 SCAF1Q9H7N4 1312 aaKnown RBP19.84■□□□□ 0.77
UBE2D3-218ENST00000505009 POTEDQ86YR6 584 aa19.82■□□□□ 0.76
UBE2D3-218ENST00000505009 DMRT2Q9Y5R5 561 aa19.61■□□□□ 0.73
UBE2D3-218ENST00000505009 CNKSR2Q8WXI2 1034 aa19.39■□□□□ 0.69
UBE2D3-218ENST00000505009 NCBP3Q53F19 620 aaKnown RBP19.26■□□□□ 0.67
UBE2D3-218ENST00000505009 KCNA4P22459 653 aa19.23■□□□□ 0.67
UBE2D3-218ENST00000505009 NPM3O75607 178 aaKnown RBP19.09■□□□□ 0.65
UBE2D3-218ENST00000505009 HOXD11P31277 338 aaPredicted RBP19.09■□□□□ 0.65
UBE2D3-218ENST00000505009 RNF216Q9NWF9 866 aaPredicted RBP19.09■□□□□ 0.65
UBE2D3-218ENST00000505009 DCAF8L1A6NGE4 600 aa18.82■□□□□ 0.6
UBE2D3-218ENST00000505009 DNAJC5BQ9UF47 199 aa18.45■□□□□ 0.54
UBE2D3-218ENST00000505009 SLC4A1APQ9BWU0 796 aaKnown RBP18.21■□□□□ 0.51
UBE2D3-218ENST00000505009 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.2■□□□□ 0.5
UBE2D3-218ENST00000505009 RNF39Q9H2S5 420 aa18.15■□□□□ 0.5
UBE2D3-218ENST00000505009 SLC4A2P04920 1241 aa18.11■□□□□ 0.49
UBE2D3-218ENST00000505009 U3KPZ7 1027 aaPredicted RBP17.92■□□□□ 0.46
UBE2D3-218ENST00000505009 CACNB1Q02641 598 aaPredicted RBP17.87■□□□□ 0.45
UBE2D3-218ENST00000505009 C1QBPQ07021 282 aaKnown RBP17.87■□□□□ 0.45
UBE2D3-218ENST00000505009 ZBTB22O15209 634 aa17.73■□□□□ 0.43
UBE2D3-218ENST00000505009 FOXD4L1Q9NU39 408 aa17.7■□□□□ 0.42
UBE2D3-218ENST00000505009 MYCNP04198 464 aaPredicted RBP17.58■□□□□ 0.4
UBE2D3-218ENST00000505009 SPINK5Q9NQ38 1064 aaPredicted RBP17.54■□□□□ 0.4
UBE2D3-218ENST00000505009 EHMT2Q96KQ7 1210 aa17.47■□□□□ 0.39
UBE2D3-218ENST00000505009 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.46■□□□□ 0.39
UBE2D3-218ENST00000505009 HNRNPUL2Q1KMD3 747 aaKnown RBP17.46■□□□□ 0.39
UBE2D3-218ENST00000505009 CAPN15O75808 1086 aa17.43■□□□□ 0.38
UBE2D3-218ENST00000505009 SAMD1Q6SPF0 538 aaPredicted RBP17.43■□□□□ 0.38
UBE2D3-218ENST00000505009 CSRNP3Q8WYN3 585 aa17.37■□□□□ 0.37
UBE2D3-218ENST00000505009 APLP2Q06481 763 aa17.32■□□□□ 0.36
UBE2D3-218ENST00000505009 TRHP20396 242 aaPredicted RBP17.29■□□□□ 0.36
UBE2D3-218ENST00000505009 ATF5Q9Y2D1 282 aaPredicted RBP17.25■□□□□ 0.35
UBE2D3-218ENST00000505009 DSG3P32926 999 aa17.2■□□□□ 0.34
UBE2D3-218ENST00000505009 ZNF219Q9P2Y4 722 aaPredicted RBP17.2■□□□□ 0.34
UBE2D3-218ENST00000505009 ABCB7O75027 752 aa17.12■□□□□ 0.33
UBE2D3-218ENST00000505009 ATXN8OSP0DMR3 200 aa17.05■□□□□ 0.32
UBE2D3-218ENST00000505009 POLA2Q14181 598 aa16.94■□□□□ 0.3
UBE2D3-218ENST00000505009 ZBTB12Q9Y330 459 aaPredicted RBP16.53■□□□□ 0.24
UBE2D3-218ENST00000505009 MKRN4PQ13434 485 aaPredicted RBP16.47■□□□□ 0.23
UBE2D3-218ENST00000505009 OSCARQ8IYS5 282 aa16.41■□□□□ 0.22
UBE2D3-218ENST00000505009 FBLN2P98095 1184 aa16.4■□□□□ 0.22
UBE2D3-218ENST00000505009 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
UBE2D3-218ENST00000505009 SPDYE2BA6NHP3 402 aa16.11■□□□□ 0.17
UBE2D3-218ENST00000505009 SPDYE6P0CI01 402 aa16.11■□□□□ 0.17
UBE2D3-218ENST00000505009 SPDYE2Q495Y8 402 aa16.11■□□□□ 0.17
UBE2D3-218ENST00000505009 AKT1S1Q96B36 256 aa16.08■□□□□ 0.16
UBE2D3-218ENST00000505009 ZNF692Q9BU19 519 aaPredicted RBP16.04■□□□□ 0.16
UBE2D3-218ENST00000505009 SSUH2Q9Y2M2 353 aa16■□□□□ 0.15
UBE2D3-218ENST00000505009 REM2Q8IYK8 340 aaPredicted RBP15.98■□□□□ 0.15
UBE2D3-218ENST00000505009 SPDYE4A6NLX3 237 aa15.91■□□□□ 0.14
UBE2D3-218ENST00000505009 PABPN1Q86U42 306 aaKnown RBP eCLIP15.85■□□□□ 0.13
UBE2D3-218ENST00000505009 PITPNM1O00562 1244 aa15.82■□□□□ 0.12
UBE2D3-218ENST00000505009 CHRDL2Q6WN34 429 aa15.8■□□□□ 0.12
UBE2D3-218ENST00000505009 FKBP8Q14318 412 aa15.71■□□□□ 0.11
UBE2D3-218ENST00000505009 CLEC11AQ9Y240 323 aa15.71■□□□□ 0.11
UBE2D3-218ENST00000505009 SPDYE1Q8NFV5 336 aaPredicted RBP15.7■□□□□ 0.1
UBE2D3-218ENST00000505009 POTEHQ6S545 545 aa15.62■□□□□ 0.09
UBE2D3-218ENST00000505009 PROM2Q8N271 834 aa15.6■□□□□ 0.09
UBE2D3-218ENST00000505009 PIP4P2Q8N4L2 257 aa15.57■□□□□ 0.08
UBE2D3-218ENST00000505009 FXR2P51116 673 aaKnown RBP eCLIP15.54■□□□□ 0.08
UBE2D3-218ENST00000505009 PRR29P0C7W0 189 aa15.49■□□□□ 0.07
UBE2D3-218ENST00000505009 STAG3Q9UJ98 1225 aa15.43■□□□□ 0.06
UBE2D3-218ENST00000505009 PRKAR2AP13861 404 aaKnown RBP15.4■□□□□ 0.06
UBE2D3-218ENST00000505009 CHADLQ6NUI6 762 aa15.4■□□□□ 0.06
UBE2D3-218ENST00000505009 CREBZFQ9NS37 354 aa15.28■□□□□ 0.04
UBE2D3-218ENST00000505009 FARP1Q9Y4F1 1045 aaPredicted RBP15.17■□□□□ 0.02
UBE2D3-218ENST00000505009 HAX1O00165 279 aa15.12■□□□□ 0.01
UBE2D3-218ENST00000505009 MIER1Q8N108 512 aa15.11■□□□□ 0.01
UBE2D3-218ENST00000505009 FBXO3Q9UK99 471 aa15.11■□□□□ 0.01
UBE2D3-218ENST00000505009 MNX1P50219 401 aaPredicted RBP15.1■□□□□ 0.01
UBE2D3-218ENST00000505009 EVX2Q03828 476 aa15.07■□□□□ 0
UBE2D3-218ENST00000505009 PLCD3Q8N3E9 789 aa15.04■□□□□ -0
UBE2D3-218ENST00000505009 C19orf67A6NJJ6 358 aa15.03■□□□□ -0
UBE2D3-218ENST00000505009 VASPP50552 380 aaPredicted RBP14.99□□□□□ -0.01
UBE2D3-218ENST00000505009 PLEKHG5O94827 1062 aa14.94□□□□□ -0.02
UBE2D3-218ENST00000505009 CD44P16070 742 aaKnown RBP14.94□□□□□ -0.02
UBE2D3-218ENST00000505009 NPM1P06748 294 aaKnown RBP eCLIP14.92□□□□□ -0.02
UBE2D3-218ENST00000505009 SP7Q8TDD2 431 aaPredicted RBP14.88□□□□□ -0.03
UBE2D3-218ENST00000505009 ZRANB1Q9UGI0 708 aa14.82□□□□□ -0.04
UBE2D3-218ENST00000505009 ZBTB47Q9UFB7 747 aaPredicted RBP14.81□□□□□ -0.04
UBE2D3-218ENST00000505009 IFNLR1Q8IU57 520 aaPredicted RBP14.8□□□□□ -0.04
UBE2D3-218ENST00000505009 RASEFQ8IZ41 740 aa14.8□□□□□ -0.04
UBE2D3-218ENST00000505009 KLHL34Q8N239 644 aa14.78□□□□□ -0.04
UBE2D3-218ENST00000505009 NUBP1P53384 320 aa14.77□□□□□ -0.05
UBE2D3-218ENST00000505009 TSPYL2Q9H2G4 693 aaPredicted RBP14.77□□□□□ -0.05
UBE2D3-218ENST00000505009 PAK3O75914 559 aaPredicted RBP14.73□□□□□ -0.05
UBE2D3-218ENST00000505009 ZNF579Q8NAF0 562 aaKnown RBP14.71□□□□□ -0.05
UBE2D3-218ENST00000505009 PHF12Q96QT6 1004 aa14.71□□□□□ -0.05
UBE2D3-218ENST00000505009 GABBR2O75899 941 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms