Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 AL513210.1-201ENST00000629608 234 ntBASIC13.73□□□□□ -0.21
AP4S1Q9Y587 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 AL603764.1-201ENST00000636452 321 ntBASIC13.73□□□□□ -0.21
AP4S1Q9Y587 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 Z98257.2-202ENST00000641138 1548 ntBASIC13.73□□□□□ -0.21
AP4S1Q9Y587 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.73□□□□□ -0.21
AP4S1Q9Y587 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 ELL2P1-201ENST00000413990 1906 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 MIR1224-201ENST00000408193 85 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 AC004461.1-201ENST00000412461 403 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 CEND1P1-201ENST00000451006 455 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 HLA-V-204ENST00000476601 1289 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 TEX28P1-201ENST00000613479 1221 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 TEX28P2-201ENST00000617764 1221 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 AP001002.3-201ENST00000623482 206 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 VENTXP1-201ENST00000569334 2716 ntBASIC13.72□□□□□ -0.21
AP4S1Q9Y587 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
AP4S1Q9Y587 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 AC064801.2-201ENST00000625052 1303 ntBASIC13.71□□□□□ -0.21
AP4S1Q9Y587 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.71□□□□□ -0.21
AP4S1Q9Y587 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
AP4S1Q9Y587 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms