RNA–Protein interactions for RNA: ENST00000379016.7

HIPK3-202, Transcript of homeodomain interacting protein kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HIPK3, Length 7,345 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3-202ENST00000379016 DCAF8L2P0C7V8 631 aa22.69■■□□□ 1.22
HIPK3-202ENST00000379016 PELP1Q8IZL8 1130 aaKnown RBP21.85■■□□□ 1.09
HIPK3-202ENST00000379016 EHMT2Q96KQ7 1210 aa21.56■■□□□ 1.04
HIPK3-202ENST00000379016 ERICH6Q7L0X2 663 aa21.41■■□□□ 1.02
HIPK3-202ENST00000379016 MYT1Q01538 1121 aa21.06■□□□□ 0.96
HIPK3-202ENST00000379016 SUPT5HO00267 1087 aaKnown RBP21.01■□□□□ 0.95
HIPK3-202ENST00000379016 CCER1Q8TC90 406 aaPredicted RBP20.91■□□□□ 0.94
HIPK3-202ENST00000379016 TTBK1Q5TCY1 1321 aaPredicted RBP20.72■□□□□ 0.91
HIPK3-202ENST00000379016 APLP2Q06481 763 aa20.68■□□□□ 0.9
HIPK3-202ENST00000379016 FAM9AQ8IZU1 332 aaPredicted RBP20.54■□□□□ 0.88
HIPK3-202ENST00000379016 SHROOM4Q9ULL8 1493 aa20.51■□□□□ 0.87
HIPK3-202ENST00000379016 RANGAP1P46060 587 aaPredicted RBP20.4■□□□□ 0.86
HIPK3-202ENST00000379016 DAXXQ9UER7 740 aaPredicted RBP20.27■□□□□ 0.84
HIPK3-202ENST00000379016 ATP1B4Q9UN42 357 aaPredicted RBP20.25■□□□□ 0.83
HIPK3-202ENST00000379016 NEFLP07196 543 aa20.23■□□□□ 0.83
HIPK3-202ENST00000379016 CENPBP07199 599 aaPredicted RBP20.19■□□□□ 0.82
HIPK3-202ENST00000379016 PCGF6Q9BYE7 350 aa20.15■□□□□ 0.82
HIPK3-202ENST00000379016 YTHDC1Q96MU7 727 aaKnown RBP20.07■□□□□ 0.8
HIPK3-202ENST00000379016 POLR3GLQ9BT43 218 aa19.84■□□□□ 0.77
HIPK3-202ENST00000379016 MYT1LQ9UL68 1186 aa19.83■□□□□ 0.76
HIPK3-202ENST00000379016 CHIC1Q5VXU3 224 aa19.82■□□□□ 0.76
HIPK3-202ENST00000379016 CNGB1Q14028 1251 aaPredicted RBP19.78■□□□□ 0.76
HIPK3-202ENST00000379016 SLC4A1APQ9BWU0 796 aaKnown RBP19.72■□□□□ 0.75
HIPK3-202ENST00000379016 ZNF316A6NFI3 1004 aaPredicted RBP19.68■□□□□ 0.74
HIPK3-202ENST00000379016 CLSPNQ9HAW4 1339 aa19.61■□□□□ 0.73
HIPK3-202ENST00000379016 RTL5Q5HYW3 569 aaPredicted RBP19.48■□□□□ 0.71
HIPK3-202ENST00000379016 PPARGC1BQ86YN6 1023 aaKnown RBP19.48■□□□□ 0.71
HIPK3-202ENST00000379016 BCL11AQ9H165 835 aa19.42■□□□□ 0.7
HIPK3-202ENST00000379016 SLC24A1O60721 1099 aa19.34■□□□□ 0.69
HIPK3-202ENST00000379016 ZEB1P37275 1124 aaPredicted RBP19.32■□□□□ 0.68
HIPK3-202ENST00000379016 UBTFP17480 764 aaKnown RBP19.27■□□□□ 0.68
HIPK3-202ENST00000379016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
HIPK3-202ENST00000379016 HNRNPUL2Q1KMD3 747 aaKnown RBP19.24■□□□□ 0.67
HIPK3-202ENST00000379016 ITGAEP38570 1179 aa19.2■□□□□ 0.66
HIPK3-202ENST00000379016 ZBTB47Q9UFB7 747 aaPredicted RBP19.15■□□□□ 0.66
HIPK3-202ENST00000379016 TRIM41Q8WV44 630 aa19.03■□□□□ 0.64
HIPK3-202ENST00000379016 EIF5BO60841 1220 aaKnown RBP18.92■□□□□ 0.62
HIPK3-202ENST00000379016 CANXP27824 592 aaKnown RBP18.77■□□□□ 0.6
HIPK3-202ENST00000379016 BCANQ96GW7 911 aa18.76■□□□□ 0.59
HIPK3-202ENST00000379016 CDK11BP21127 795 aaKnown RBP18.68■□□□□ 0.58
HIPK3-202ENST00000379016 ANP32BQ92688 251 aaKnown RBP18.68■□□□□ 0.58
HIPK3-202ENST00000379016 CDK11AQ9UQ88 783 aaPredicted RBP18.68■□□□□ 0.58
HIPK3-202ENST00000379016 HSP90AA1P07900 732 aaKnown RBP18.57■□□□□ 0.56
HIPK3-202ENST00000379016 NPM2Q86SE8 214 aaKnown RBP18.57■□□□□ 0.56
HIPK3-202ENST00000379016 PLPPR3Q6T4P5 718 aa18.57■□□□□ 0.56
HIPK3-202ENST00000379016 TULP1O00294 542 aaPredicted RBP18.55■□□□□ 0.56
HIPK3-202ENST00000379016 NEFMP07197 916 aa18.55■□□□□ 0.56
HIPK3-202ENST00000379016 GLIPR1L2Q4G1C9 344 aa18.51■□□□□ 0.55
HIPK3-202ENST00000379016 ARXQ96QS3 562 aa18.51■□□□□ 0.55
HIPK3-202ENST00000379016 ZNF326Q5BKZ1 582 aaKnown RBP18.5■□□□□ 0.55
HIPK3-202ENST00000379016 NCBP3Q53F19 620 aaKnown RBP18.5■□□□□ 0.55
HIPK3-202ENST00000379016 TRIM52Q96A61 297 aa18.45■□□□□ 0.54
HIPK3-202ENST00000379016 A0A0G2JS52 829 aa18.41■□□□□ 0.54
HIPK3-202ENST00000379016 HRCP23327 699 aa18.4■□□□□ 0.54
HIPK3-202ENST00000379016 NEUROD1Q13562 356 aa18.39■□□□□ 0.53
HIPK3-202ENST00000379016 ANP32AP39687 249 aaKnown RBP18.38■□□□□ 0.53
HIPK3-202ENST00000379016 FAM50AQ14320 339 aaKnown RBP18.34■□□□□ 0.53
HIPK3-202ENST00000379016 NISCHQ9Y2I1 1504 aa18.31■□□□□ 0.52
HIPK3-202ENST00000379016 TRIM26Q12899 539 aaPredicted RBP18.26■□□□□ 0.51
HIPK3-202ENST00000379016 LOC105371045A0A1W2PR82 267 aa18.26■□□□□ 0.51
HIPK3-202ENST00000379016 DIEXFQ68CQ4 756 aaKnown RBP18.25■□□□□ 0.51
HIPK3-202ENST00000379016 SCAF1Q9H7N4 1312 aaKnown RBP18.25■□□□□ 0.51
HIPK3-202ENST00000379016 ARID3CA6NKF2 412 aa18.23■□□□□ 0.51
HIPK3-202ENST00000379016 ANP32CO43423 234 aa18.21■□□□□ 0.51
HIPK3-202ENST00000379016 FBLN2P98095 1184 aa18.21■□□□□ 0.51
HIPK3-202ENST00000379016 UPF2Q9HAU5 1272 aaKnown RBP18.16■□□□□ 0.5
HIPK3-202ENST00000379016 PLEKHG5O94827 1062 aa18.16■□□□□ 0.5
HIPK3-202ENST00000379016 NBR1Q14596 966 aa18.12■□□□□ 0.49
HIPK3-202ENST00000379016 AMER1Q5JTC6 1135 aaPredicted RBP18.11■□□□□ 0.49
HIPK3-202ENST00000379016 TPRNQ4KMQ1 711 aa18.09■□□□□ 0.49
HIPK3-202ENST00000379016 GTF3C3Q9Y5Q9 886 aa18.08■□□□□ 0.49
HIPK3-202ENST00000379016 SENP3Q9H4L4 574 aaPredicted RBP18.08■□□□□ 0.48
HIPK3-202ENST00000379016 TNNT2P45379 298 aaPredicted RBP18.02■□□□□ 0.48
HIPK3-202ENST00000379016 ESF1Q9H501 851 aaKnown RBP18.02■□□□□ 0.48
HIPK3-202ENST00000379016 TAOK2Q9UL54 1235 aa18.02■□□□□ 0.47
HIPK3-202ENST00000379016 STAG3Q9UJ98 1225 aa17.99■□□□□ 0.47
HIPK3-202ENST00000379016 SALL2Q9Y467 1007 aaPredicted RBP17.99■□□□□ 0.47
HIPK3-202ENST00000379016 ZBTB7CA1YPR0 619 aa17.97■□□□□ 0.47
HIPK3-202ENST00000379016 PRM3Q9NNZ6 103 aa17.95■□□□□ 0.46
HIPK3-202ENST00000379016 CLSTN1O94985 981 aa17.93■□□□□ 0.46
HIPK3-202ENST00000379016 CHGAP10645 457 aaKnown RBP17.93■□□□□ 0.46
HIPK3-202ENST00000379016 DNTTIP2Q5QJE6 756 aaKnown RBP17.91■□□□□ 0.46
HIPK3-202ENST00000379016 ZRSR1Q15695 479 aaKnown RBP17.89■□□□□ 0.45
HIPK3-202ENST00000379016 TRIM44Q96DX7 344 aaPredicted RBP17.89■□□□□ 0.45
HIPK3-202ENST00000379016 NCLP19338 710 aaKnown RBP17.87■□□□□ 0.45
HIPK3-202ENST00000379016 P3H3Q8IVL6 736 aa17.85■□□□□ 0.45
HIPK3-202ENST00000379016 ZNF777Q9ULD5 760 aaPredicted RBP17.84■□□□□ 0.45
HIPK3-202ENST00000379016 PTMAP06454 111 aaKnown RBP17.84■□□□□ 0.45
HIPK3-202ENST00000379016 PABPN1Q86U42 306 aaKnown RBP eCLIP17.77■□□□□ 0.44
HIPK3-202ENST00000379016 C14orf37Q86TY3 774 aa17.76■□□□□ 0.43
HIPK3-202ENST00000379016 NPHP1O15259 732 aa17.75■□□□□ 0.43
HIPK3-202ENST00000379016 MYH16Q9H6N6 1097 aa17.75■□□□□ 0.43
HIPK3-202ENST00000379016 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.74■□□□□ 0.43
HIPK3-202ENST00000379016 FKBP8Q14318 412 aa17.73■□□□□ 0.43
HIPK3-202ENST00000379016 PLCB2Q00722 1185 aa17.73■□□□□ 0.43
HIPK3-202ENST00000379016 FAM9BQ8IZU0 186 aa17.68■□□□□ 0.42
HIPK3-202ENST00000379016 HAP1P54257 671 aaPredicted RBP17.67■□□□□ 0.42
HIPK3-202ENST00000379016 NAP1L5Q96NT1 182 aaPredicted RBP17.63■□□□□ 0.41
HIPK3-202ENST00000379016 CCDC136Q96JN2 1154 aa17.62■□□□□ 0.41
HIPK3-202ENST00000379016 FBXO3Q9UK99 471 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms