Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC104982.3-201ENST00000581995 514 ntBASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 AC008267.1-201ENST00000474858 1069 ntBASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 AC021723.1-201ENST00000486306 515 ntBASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 MIR4750-201ENST00000584564 56 ntBASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 AC091812.3-201ENST00000621362 345 ntBASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHROOM3Q8TF72 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AL157996.1-201ENST00000624684 2299 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 LINC01165-201ENST00000445190 1623 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 RN7SL574P-201ENST00000581512 297 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AL591471.1-201ENST00000621855 229 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AC015909.3-201ENST00000572855 1794 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 FAM90A12P-201ENST00000519497 2375 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 FAM90A24P-201ENST00000520792 2369 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 RPS9P1-201ENST00000419943 583 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 IMP3P2-201ENST00000489760 475 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AC125604.1-201ENST00000496255 707 ntBASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms