RNA–Protein interactions for RNA: ENST00000187762.6

TMEM38A-201, Transcript of transmembrane protein 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM38A, Length 2,649 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM38A-201ENST00000187762 NISCHQ9Y2I1 1504 aa29.72■■■□□ 2.35
TMEM38A-201ENST00000187762 SHROOM4Q9ULL8 1493 aa25.45■■□□□ 1.66
TMEM38A-201ENST00000187762 CCDC180Q9P1Z9 1646 aa25.26■■□□□ 1.63
TMEM38A-201ENST00000187762 HRCP23327 699 aa25.18■■□□□ 1.62
TMEM38A-201ENST00000187762 ZCCHC6Q5VYS8 1495 aaKnown RBP25.14■■□□□ 1.62
TMEM38A-201ENST00000187762 PELP1Q8IZL8 1130 aaKnown RBP25.02■■□□□ 1.6
TMEM38A-201ENST00000187762 SUPT5HO00267 1087 aaKnown RBP24.92■■□□□ 1.58
TMEM38A-201ENST00000187762 DCAF8L2P0C7V8 631 aa24.71■■□□□ 1.55
TMEM38A-201ENST00000187762 PPARGC1BQ86YN6 1023 aaKnown RBP24.57■■□□□ 1.52
TMEM38A-201ENST00000187762 PCGF6Q9BYE7 350 aa24.36■■□□□ 1.49
TMEM38A-201ENST00000187762 DCAF1Q9Y4B6 1507 aa24.32■■□□□ 1.48
TMEM38A-201ENST00000187762 MYT1Q01538 1121 aa24.2■■□□□ 1.47
TMEM38A-201ENST00000187762 CHIC1Q5VXU3 224 aa24.19■■□□□ 1.46
TMEM38A-201ENST00000187762 MYO15BQ96JP2 1530 aa24.19■■□□□ 1.46
TMEM38A-201ENST00000187762 SCAF1Q9H7N4 1312 aaKnown RBP24.06■■□□□ 1.44
TMEM38A-201ENST00000187762 SCRIBQ14160 1630 aa23.76■■□□□ 1.39
TMEM38A-201ENST00000187762 ABCC9O60706 1549 aa23.75■■□□□ 1.39
TMEM38A-201ENST00000187762 RSF1Q96T23 1441 aaPredicted RBP23.53■■□□□ 1.36
TMEM38A-201ENST00000187762 LOC105371045A0A1W2PR82 267 aa23.53■■□□□ 1.36
TMEM38A-201ENST00000187762 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
TMEM38A-201ENST00000187762 ZEB1P37275 1124 aaPredicted RBP23.5■■□□□ 1.35
TMEM38A-201ENST00000187762 RB1CC1Q8TDY2 1594 aa23.36■■□□□ 1.33
TMEM38A-201ENST00000187762 ACIN1Q9UKV3 1341 aaKnown RBP23.34■■□□□ 1.33
TMEM38A-201ENST00000187762 NACADO15069 1562 aa23.32■■□□□ 1.32
TMEM38A-201ENST00000187762 CECR2Q9BXF3 1484 aa23.23■■□□□ 1.31
TMEM38A-201ENST00000187762 NEUROD1Q13562 356 aa23.23■■□□□ 1.31
TMEM38A-201ENST00000187762 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
TMEM38A-201ENST00000187762 MROH2BQ7Z745 1585 aa23.15■■□□□ 1.3
TMEM38A-201ENST00000187762 GTF3C3Q9Y5Q9 886 aa23.14■■□□□ 1.29
TMEM38A-201ENST00000187762 WIZO95785 1651 aa23.06■■□□□ 1.28
TMEM38A-201ENST00000187762 FAM9AQ8IZU1 332 aaPredicted RBP23.05■■□□□ 1.28
TMEM38A-201ENST00000187762 CENPBP07199 599 aaPredicted RBP22.96■■□□□ 1.27
TMEM38A-201ENST00000187762 EHMT2Q96KQ7 1210 aa22.92■■□□□ 1.26
TMEM38A-201ENST00000187762 BAZ1AQ9NRL2 1556 aaPredicted RBP22.86■■□□□ 1.25
TMEM38A-201ENST00000187762 TTBK1Q5TCY1 1321 aaPredicted RBP22.86■■□□□ 1.25
TMEM38A-201ENST00000187762 UNC13AQ9UPW8 1703 aa22.75■■□□□ 1.23
TMEM38A-201ENST00000187762 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
TMEM38A-201ENST00000187762 SMARCA4P51532 1647 aa22.66■■□□□ 1.22
TMEM38A-201ENST00000187762 DIEXFQ68CQ4 756 aaKnown RBP22.66■■□□□ 1.22
TMEM38A-201ENST00000187762 TOP2AP11388 1531 aaKnown RBP22.63■■□□□ 1.21
TMEM38A-201ENST00000187762 ABCC8Q09428 1581 aa22.56■■□□□ 1.2
TMEM38A-201ENST00000187762 CCDC88BA6NC98 1476 aa22.55■■□□□ 1.2
TMEM38A-201ENST00000187762 BCL11AQ9H165 835 aa22.54■■□□□ 1.2
TMEM38A-201ENST00000187762 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
TMEM38A-201ENST00000187762 PABPN1Q86U42 306 aaKnown RBP eCLIP22.45■■□□□ 1.18
TMEM38A-201ENST00000187762 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.41■■□□□ 1.18
TMEM38A-201ENST00000187762 BICRAQ9NZM4 1560 aa22.4■■□□□ 1.18
TMEM38A-201ENST00000187762 CCER1Q8TC90 406 aaPredicted RBP22.39■■□□□ 1.18
TMEM38A-201ENST00000187762 SOGA1O94964 1423 aa22.32■■□□□ 1.16
TMEM38A-201ENST00000187762 YTHDC1Q96MU7 727 aaKnown RBP22.29■■□□□ 1.16
TMEM38A-201ENST00000187762 ANP32EQ9BTT0 268 aa22.27■■□□□ 1.16
TMEM38A-201ENST00000187762 RUSC2Q8N2Y8 1516 aa22.23■■□□□ 1.15
TMEM38A-201ENST00000187762 CEP162Q5TB80 1403 aa22.19■■□□□ 1.14
TMEM38A-201ENST00000187762 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
TMEM38A-201ENST00000187762 ZNF316A6NFI3 1004 aaPredicted RBP22.13■■□□□ 1.13
TMEM38A-201ENST00000187762 CSRNP3Q8WYN3 585 aa22.12■■□□□ 1.13
TMEM38A-201ENST00000187762 WRNQ14191 1432 aaPredicted RBP eCLIP22.11■■□□□ 1.13
TMEM38A-201ENST00000187762 TNIKQ9UKE5 1360 aa22.11■■□□□ 1.13
TMEM38A-201ENST00000187762 EEA1Q15075 1411 aa22.09■■□□□ 1.13
TMEM38A-201ENST00000187762 UBTFP17480 764 aaKnown RBP22.08■■□□□ 1.12
TMEM38A-201ENST00000187762 ATAD2BQ9ULI0 1458 aa22.05■■□□□ 1.12
TMEM38A-201ENST00000187762 SYNJ1O43426 1573 aa22.05■■□□□ 1.12
TMEM38A-201ENST00000187762 MIER1Q8N108 512 aa22.03■■□□□ 1.12
TMEM38A-201ENST00000187762 GOLGA3Q08378 1498 aa22■■□□□ 1.11
TMEM38A-201ENST00000187762 BAZ1BQ9UIG0 1483 aaKnown RBP22■■□□□ 1.11
TMEM38A-201ENST00000187762 TSHZ2Q9NRE2 1034 aa21.98■■□□□ 1.11
TMEM38A-201ENST00000187762 PRKCSHP14314 528 aaPredicted RBP21.96■■□□□ 1.11
TMEM38A-201ENST00000187762 SUPT16HQ9Y5B9 1047 aaKnown RBP21.94■■□□□ 1.1
TMEM38A-201ENST00000187762 CLSPNQ9HAW4 1339 aa21.94■■□□□ 1.1
TMEM38A-201ENST00000187762 CEP164Q9UPV0 1460 aa21.87■■□□□ 1.09
TMEM38A-201ENST00000187762 KIF21BO75037 1637 aa21.86■■□□□ 1.09
TMEM38A-201ENST00000187762 CLIP1P30622 1438 aa21.76■■□□□ 1.07
TMEM38A-201ENST00000187762 RAPGEF2Q9Y4G8 1499 aa21.76■■□□□ 1.07
TMEM38A-201ENST00000187762 TOP2BQ02880 1626 aa21.73■■□□□ 1.07
TMEM38A-201ENST00000187762 RANGAP1P46060 587 aaPredicted RBP21.72■■□□□ 1.07
TMEM38A-201ENST00000187762 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
TMEM38A-201ENST00000187762 VPS8Q8N3P4 1428 aa21.66■■□□□ 1.06
TMEM38A-201ENST00000187762 HNRNPUL2Q1KMD3 747 aaKnown RBP21.62■■□□□ 1.05
TMEM38A-201ENST00000187762 HMGXB3Q12766 1538 aa21.59■■□□□ 1.05
TMEM38A-201ENST00000187762 NCAPD3P42695 1498 aa21.58■■□□□ 1.05
TMEM38A-201ENST00000187762 CUX1P39880 1505 aa21.54■■□□□ 1.04
TMEM38A-201ENST00000187762 APLP2Q06481 763 aa21.54■■□□□ 1.04
TMEM38A-201ENST00000187762 PRXQ9BXM0 1461 aa21.5■■□□□ 1.03
TMEM38A-201ENST00000187762 ERICH6Q7L0X2 663 aa21.5■■□□□ 1.03
TMEM38A-201ENST00000187762 ERICH3Q5RHP9 1530 aa21.49■■□□□ 1.03
TMEM38A-201ENST00000187762 ARAP1Q96P48 1450 aa21.44■■□□□ 1.02
TMEM38A-201ENST00000187762 CFTRP13569 1480 aa21.43■■□□□ 1.02
TMEM38A-201ENST00000187762 RBM19Q9Y4C8 960 aaKnown RBP21.41■■□□□ 1.02
TMEM38A-201ENST00000187762 KIF27Q86VH2 1401 aa21.39■■□□□ 1.02
TMEM38A-201ENST00000187762 BCANQ96GW7 911 aa21.35■■□□□ 1.01
TMEM38A-201ENST00000187762 KANK4Q5T7N3 995 aaPredicted RBP21.34■■□□□ 1.01
TMEM38A-201ENST00000187762 PRDM2Q13029 1718 aa21.32■■□□□ 1
TMEM38A-201ENST00000187762 MSH5O43196 834 aa21.27■■□□□ 1
TMEM38A-201ENST00000187762 ARHGAP35Q9NRY4 1499 aa21.25■□□□□ 0.99
TMEM38A-201ENST00000187762 CUX2O14529 1486 aa21.23■□□□□ 0.99
TMEM38A-201ENST00000187762 FKBP8Q14318 412 aa21.23■□□□□ 0.99
TMEM38A-201ENST00000187762 CADPSQ9ULU8 1353 aa21.19■□□□□ 0.98
TMEM38A-201ENST00000187762 IGF1RP08069 1367 aa21.17■□□□□ 0.98
TMEM38A-201ENST00000187762 DHX57Q6P158 1386 aaKnown RBP21.17■□□□□ 0.98
TMEM38A-201ENST00000187762 FGD5Q6ZNL6 1462 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms