RNA–Protein interactions for RNA: ENST00000369406.7

HMGCS2-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS2, Length 2,428 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2-201ENST00000369406 NISCHQ9Y2I1 1504 aa32.27■■■□□ 2.76
HMGCS2-201ENST00000369406 CCDC180Q9P1Z9 1646 aa28.13■■■□□ 2.09
HMGCS2-201ENST00000369406 ZCCHC6Q5VYS8 1495 aaKnown RBP27.11■■□□□ 1.93
HMGCS2-201ENST00000369406 ABCC9O60706 1549 aa26.7■■□□□ 1.86
HMGCS2-201ENST00000369406 DCAF8L2P0C7V8 631 aa26.63■■□□□ 1.85
HMGCS2-201ENST00000369406 DCAF1Q9Y4B6 1507 aa26.59■■□□□ 1.85
HMGCS2-201ENST00000369406 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
HMGCS2-201ENST00000369406 MYO15BQ96JP2 1530 aa26.24■■□□□ 1.79
HMGCS2-201ENST00000369406 NACADO15069 1562 aa26.14■■□□□ 1.77
HMGCS2-201ENST00000369406 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
HMGCS2-201ENST00000369406 RB1CC1Q8TDY2 1594 aa25.94■■□□□ 1.74
HMGCS2-201ENST00000369406 UNC13AQ9UPW8 1703 aa25.68■■□□□ 1.7
HMGCS2-201ENST00000369406 BICRAQ9NZM4 1560 aa25.32■■□□□ 1.64
HMGCS2-201ENST00000369406 SUPT5HO00267 1087 aaKnown RBP25.32■■□□□ 1.64
HMGCS2-201ENST00000369406 CECR2Q9BXF3 1484 aa25.18■■□□□ 1.62
HMGCS2-201ENST00000369406 PABPN1Q86U42 306 aaKnown RBP eCLIP25.17■■□□□ 1.62
HMGCS2-201ENST00000369406 RSF1Q96T23 1441 aaPredicted RBP25.04■■□□□ 1.6
HMGCS2-201ENST00000369406 MROH2BQ7Z745 1585 aa25.01■■□□□ 1.59
HMGCS2-201ENST00000369406 BAZ1AQ9NRL2 1556 aaPredicted RBP24.87■■□□□ 1.57
HMGCS2-201ENST00000369406 SMARCA4P51532 1647 aa24.85■■□□□ 1.57
HMGCS2-201ENST00000369406 WIZO95785 1651 aa24.85■■□□□ 1.57
HMGCS2-201ENST00000369406 EIF4G1Q04637 1599 aaKnown RBP24.49■■□□□ 1.51
HMGCS2-201ENST00000369406 PEG3Q9GZU2 1588 aa24.49■■□□□ 1.51
HMGCS2-201ENST00000369406 TOP2AP11388 1531 aaKnown RBP24.47■■□□□ 1.51
HMGCS2-201ENST00000369406 ATAD2BQ9ULI0 1458 aa24.4■■□□□ 1.5
HMGCS2-201ENST00000369406 SMARCA2P51531 1590 aa24.32■■□□□ 1.48
HMGCS2-201ENST00000369406 CCDC88BA6NC98 1476 aa24.25■■□□□ 1.47
HMGCS2-201ENST00000369406 BAZ1BQ9UIG0 1483 aaKnown RBP24.23■■□□□ 1.47
HMGCS2-201ENST00000369406 CHIC1Q5VXU3 224 aa24.22■■□□□ 1.47
HMGCS2-201ENST00000369406 CC2D2AQ9P2K1 1620 aa24.16■■□□□ 1.46
HMGCS2-201ENST00000369406 NCAPD3P42695 1498 aa24.14■■□□□ 1.45
HMGCS2-201ENST00000369406 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
HMGCS2-201ENST00000369406 ABCC8Q09428 1581 aa23.83■■□□□ 1.4
HMGCS2-201ENST00000369406 DNAJC5BQ9UF47 199 aa23.72■■□□□ 1.39
HMGCS2-201ENST00000369406 TRIM41Q8WV44 630 aa23.71■■□□□ 1.39
HMGCS2-201ENST00000369406 CFTRP13569 1480 aa23.63■■□□□ 1.37
HMGCS2-201ENST00000369406 PRDM2Q13029 1718 aa23.61■■□□□ 1.37
HMGCS2-201ENST00000369406 SYNJ1O43426 1573 aa23.56■■□□□ 1.36
HMGCS2-201ENST00000369406 WRNQ14191 1432 aaPredicted RBP eCLIP23.52■■□□□ 1.36
HMGCS2-201ENST00000369406 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
HMGCS2-201ENST00000369406 NESP48681 1621 aa23.49■■□□□ 1.35
HMGCS2-201ENST00000369406 FAM9AQ8IZU1 332 aaPredicted RBP23.41■■□□□ 1.34
HMGCS2-201ENST00000369406 TOP2BQ02880 1626 aa23.38■■□□□ 1.33
HMGCS2-201ENST00000369406 BIVM-ERCC5R4GMW8 1640 aa23.38■■□□□ 1.33
HMGCS2-201ENST00000369406 CUX1P39880 1505 aa23.37■■□□□ 1.33
HMGCS2-201ENST00000369406 LOC105371045A0A1W2PR82 267 aa23.37■■□□□ 1.33
HMGCS2-201ENST00000369406 LAMC3Q9Y6N6 1575 aa23.33■■□□□ 1.33
HMGCS2-201ENST00000369406 SOGA1O94964 1423 aa23.32■■□□□ 1.32
HMGCS2-201ENST00000369406 RUSC2Q8N2Y8 1516 aa23.3■■□□□ 1.32
HMGCS2-201ENST00000369406 FANCD2Q9BXW9 1451 aa23.3■■□□□ 1.32
HMGCS2-201ENST00000369406 KIF21AQ7Z4S6 1674 aa23.23■■□□□ 1.31
HMGCS2-201ENST00000369406 EHMT2Q96KQ7 1210 aa23.16■■□□□ 1.3
HMGCS2-201ENST00000369406 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
HMGCS2-201ENST00000369406 DNMBPQ6XZF7 1577 aa23.1■■□□□ 1.29
HMGCS2-201ENST00000369406 URB2Q14146 1524 aaKnown RBP23.09■■□□□ 1.29
HMGCS2-201ENST00000369406 PDS5BQ9NTI5 1447 aa23.08■■□□□ 1.29
HMGCS2-201ENST00000369406 FGD5Q6ZNL6 1462 aa23.08■■□□□ 1.29
HMGCS2-201ENST00000369406 TOPBP1Q92547 1522 aa23.08■■□□□ 1.28
HMGCS2-201ENST00000369406 EEA1Q15075 1411 aa23.04■■□□□ 1.28
HMGCS2-201ENST00000369406 CSRNP3Q8WYN3 585 aa23■■□□□ 1.27
HMGCS2-201ENST00000369406 POLA1P09884 1462 aaPredicted RBP22.97■■□□□ 1.27
HMGCS2-201ENST00000369406 RAD54L2Q9Y4B4 1467 aa22.95■■□□□ 1.26
HMGCS2-201ENST00000369406 KIF21BO75037 1637 aa22.9■■□□□ 1.26
HMGCS2-201ENST00000369406 CUX2O14529 1486 aa22.9■■□□□ 1.26
HMGCS2-201ENST00000369406 WDR97A6NE52 1622 aa22.88■■□□□ 1.25
HMGCS2-201ENST00000369406 KIF27Q86VH2 1401 aa22.87■■□□□ 1.25
HMGCS2-201ENST00000369406 MRC2Q9UBG0 1479 aa22.87■■□□□ 1.25
HMGCS2-201ENST00000369406 RAPGEF2Q9Y4G8 1499 aa22.83■■□□□ 1.25
HMGCS2-201ENST00000369406 GOLGA3Q08378 1498 aa22.83■■□□□ 1.25
HMGCS2-201ENST00000369406 ABCA10Q8WWZ4 1543 aa22.83■■□□□ 1.24
HMGCS2-201ENST00000369406 THOC2Q8NI27 1593 aaKnown RBP22.8■■□□□ 1.24
HMGCS2-201ENST00000369406 TARBP1Q13395 1621 aaKnown RBP22.79■■□□□ 1.24
HMGCS2-201ENST00000369406 WDR62O43379 1518 aa22.79■■□□□ 1.24
HMGCS2-201ENST00000369406 PRXQ9BXM0 1461 aa22.79■■□□□ 1.24
HMGCS2-201ENST00000369406 ERCC6Q03468 1493 aa22.78■■□□□ 1.24
HMGCS2-201ENST00000369406 IGF1RP08069 1367 aa22.74■■□□□ 1.23
HMGCS2-201ENST00000369406 TNIKQ9UKE5 1360 aa22.73■■□□□ 1.23
HMGCS2-201ENST00000369406 ABCA5Q8WWZ7 1642 aa22.72■■□□□ 1.23
HMGCS2-201ENST00000369406 ERICH3Q5RHP9 1530 aa22.71■■□□□ 1.23
HMGCS2-201ENST00000369406 UBTFP17480 764 aaKnown RBP22.7■■□□□ 1.22
HMGCS2-201ENST00000369406 CEP162Q5TB80 1403 aa22.68■■□□□ 1.22
HMGCS2-201ENST00000369406 TDRD9Q8NDG6 1382 aaKnown RBP22.68■■□□□ 1.22
HMGCS2-201ENST00000369406 GAPVD1Q14C86 1478 aa22.59■■□□□ 1.21
HMGCS2-201ENST00000369406 PBRM1Q86U86 1689 aa22.59■■□□□ 1.21
HMGCS2-201ENST00000369406 CARMIL1Q5VZK9 1371 aa22.59■■□□□ 1.21
HMGCS2-201ENST00000369406 ZNF608Q9ULD9 1512 aaPredicted RBP22.59■■□□□ 1.21
HMGCS2-201ENST00000369406 AQRO60306 1485 aaKnown RBP eCLIP22.56■■□□□ 1.2
HMGCS2-201ENST00000369406 CUL7Q14999 1698 aa22.56■■□□□ 1.2
HMGCS2-201ENST00000369406 IFT140Q96RY7 1462 aa22.55■■□□□ 1.2
HMGCS2-201ENST00000369406 EIF4G3O43432 1585 aaKnown RBP22.49■■□□□ 1.19
HMGCS2-201ENST00000369406 CLIP1P30622 1438 aa22.48■■□□□ 1.19
HMGCS2-201ENST00000369406 RANGAP1P46060 587 aaPredicted RBP22.48■■□□□ 1.19
HMGCS2-201ENST00000369406 ADAMTS12P58397 1594 aa22.42■■□□□ 1.18
HMGCS2-201ENST00000369406 CTTNBP2Q8WZ74 1663 aa22.4■■□□□ 1.18
HMGCS2-201ENST00000369406 GRIN2BQ13224 1484 aa22.39■■□□□ 1.17
HMGCS2-201ENST00000369406 ARAP1Q96P48 1450 aa22.36■■□□□ 1.17
HMGCS2-201ENST00000369406 ARHGAP35Q9NRY4 1499 aa22.33■■□□□ 1.17
HMGCS2-201ENST00000369406 PPARGC1BQ86YN6 1023 aaKnown RBP22.32■■□□□ 1.16
HMGCS2-201ENST00000369406 SNAPC4Q5SXM2 1469 aa22.32■■□□□ 1.16
HMGCS2-201ENST00000369406 FHAD1B1AJZ9 1412 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms