RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 PELP1Q8IZL8 1130 aaKnown RBP25.24■■□□□ 1.63
COL5A1-208ENST00000618395 MYT1Q01538 1121 aa25.1■■□□□ 1.61
COL5A1-208ENST00000618395 ERICH6Q7L0X2 663 aa24.15■■□□□ 1.46
COL5A1-208ENST00000618395 CCER1Q8TC90 406 aaPredicted RBP23.95■■□□□ 1.43
COL5A1-208ENST00000618395 CENPBP07199 599 aaPredicted RBP23.71■■□□□ 1.39
COL5A1-208ENST00000618395 TTBK1Q5TCY1 1321 aaPredicted RBP23.61■■□□□ 1.37
COL5A1-208ENST00000618395 DCAF8L2P0C7V8 631 aa23.48■■□□□ 1.35
COL5A1-208ENST00000618395 YTHDC1Q96MU7 727 aaKnown RBP23.3■■□□□ 1.32
COL5A1-208ENST00000618395 ZEB1P37275 1124 aaPredicted RBP23.01■■□□□ 1.27
COL5A1-208ENST00000618395 NEFLP07196 543 aa23■■□□□ 1.27
COL5A1-208ENST00000618395 PCGF6Q9BYE7 350 aa22.86■■□□□ 1.25
COL5A1-208ENST00000618395 SUPT5HO00267 1087 aaKnown RBP22.85■■□□□ 1.25
COL5A1-208ENST00000618395 DAXXQ9UER7 740 aaPredicted RBP22.65■■□□□ 1.22
COL5A1-208ENST00000618395 APLP2Q06481 763 aa22.58■■□□□ 1.2
COL5A1-208ENST00000618395 RTL5Q5HYW3 569 aaPredicted RBP22.47■■□□□ 1.19
COL5A1-208ENST00000618395 EHMT2Q96KQ7 1210 aa22.45■■□□□ 1.18
COL5A1-208ENST00000618395 GLIPR1L2Q4G1C9 344 aa22.14■■□□□ 1.14
COL5A1-208ENST00000618395 ZNF316A6NFI3 1004 aaPredicted RBP22.07■■□□□ 1.12
COL5A1-208ENST00000618395 HRCP23327 699 aa21.95■■□□□ 1.1
COL5A1-208ENST00000618395 FAM9AQ8IZU1 332 aaPredicted RBP21.92■■□□□ 1.1
COL5A1-208ENST00000618395 EIF5BO60841 1220 aaKnown RBP21.88■■□□□ 1.09
COL5A1-208ENST00000618395 SHROOM4Q9ULL8 1493 aa21.84■■□□□ 1.09
COL5A1-208ENST00000618395 TRIM26Q12899 539 aaPredicted RBP21.61■■□□□ 1.05
COL5A1-208ENST00000618395 GTF3C3Q9Y5Q9 886 aa21.57■■□□□ 1.04
COL5A1-208ENST00000618395 CLSPNQ9HAW4 1339 aa21.55■■□□□ 1.04
COL5A1-208ENST00000618395 MYT1LQ9UL68 1186 aa21.54■■□□□ 1.04
COL5A1-208ENST00000618395 CDK11AQ9UQ88 783 aaPredicted RBP21.5■■□□□ 1.03
COL5A1-208ENST00000618395 NISCHQ9Y2I1 1504 aa21.5■■□□□ 1.03
COL5A1-208ENST00000618395 DIEXFQ68CQ4 756 aaKnown RBP21.46■■□□□ 1.03
COL5A1-208ENST00000618395 ANP32AP39687 249 aaKnown RBP21.29■■□□□ 1
COL5A1-208ENST00000618395 ANP32BQ92688 251 aaKnown RBP21.26■□□□□ 0.99
COL5A1-208ENST00000618395 RANGAP1P46060 587 aaPredicted RBP21.25■□□□□ 0.99
COL5A1-208ENST00000618395 PPARGC1BQ86YN6 1023 aaKnown RBP21.24■□□□□ 0.99
COL5A1-208ENST00000618395 BCANQ96GW7 911 aa21.2■□□□□ 0.98
COL5A1-208ENST00000618395 TRIM41Q8WV44 630 aa21.15■□□□□ 0.98
COL5A1-208ENST00000618395 ATP1B4Q9UN42 357 aaPredicted RBP21.11■□□□□ 0.97
COL5A1-208ENST00000618395 ACIN1Q9UKV3 1341 aaKnown RBP21.1■□□□□ 0.97
COL5A1-208ENST00000618395 TNNT2P45379 298 aaPredicted RBP21.08■□□□□ 0.97
COL5A1-208ENST00000618395 POLR3GLQ9BT43 218 aa21.06■□□□□ 0.96
COL5A1-208ENST00000618395 UBTFP17480 764 aaKnown RBP21.06■□□□□ 0.96
COL5A1-208ENST00000618395 NBR1Q14596 966 aa20.87■□□□□ 0.93
COL5A1-208ENST00000618395 CNGB1Q14028 1251 aaPredicted RBP20.86■□□□□ 0.93
COL5A1-208ENST00000618395 ZBTB47Q9UFB7 747 aaPredicted RBP20.82■□□□□ 0.92
COL5A1-208ENST00000618395 CDK11BP21127 795 aaKnown RBP20.82■□□□□ 0.92
COL5A1-208ENST00000618395 NPM2Q86SE8 214 aaKnown RBP20.8■□□□□ 0.92
COL5A1-208ENST00000618395 ANP32CO43423 234 aa20.73■□□□□ 0.91
COL5A1-208ENST00000618395 BCL11AQ9H165 835 aa20.73■□□□□ 0.91
COL5A1-208ENST00000618395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.71■□□□□ 0.91
COL5A1-208ENST00000618395 TRIM44Q96DX7 344 aaPredicted RBP20.68■□□□□ 0.9
COL5A1-208ENST00000618395 HSP90AA1P07900 732 aaKnown RBP20.68■□□□□ 0.9
COL5A1-208ENST00000618395 ANP32EQ9BTT0 268 aa20.66■□□□□ 0.9
COL5A1-208ENST00000618395 NCLP19338 710 aaKnown RBP20.63■□□□□ 0.89
COL5A1-208ENST00000618395 ITGAEP38570 1179 aa20.62■□□□□ 0.89
COL5A1-208ENST00000618395 HNRNPUL2Q1KMD3 747 aaKnown RBP20.62■□□□□ 0.89
COL5A1-208ENST00000618395 UPF2Q9HAU5 1272 aaKnown RBP20.6■□□□□ 0.89
COL5A1-208ENST00000618395 ERICH6BQ5W0A0 696 aa20.56■□□□□ 0.88
COL5A1-208ENST00000618395 CANXP27824 592 aaKnown RBP20.55■□□□□ 0.88
COL5A1-208ENST00000618395 ARXQ96QS3 562 aa20.54■□□□□ 0.88
COL5A1-208ENST00000618395 FKBP8Q14318 412 aa20.54■□□□□ 0.88
COL5A1-208ENST00000618395 SLC4A1APQ9BWU0 796 aaKnown RBP20.53■□□□□ 0.88
COL5A1-208ENST00000618395 SCAF1Q9H7N4 1312 aaKnown RBP20.47■□□□□ 0.87
COL5A1-208ENST00000618395 NAP1L5Q96NT1 182 aaPredicted RBP20.46■□□□□ 0.87
COL5A1-208ENST00000618395 RTN4Q9NQC3 1192 aaKnown RBP20.36■□□□□ 0.85
COL5A1-208ENST00000618395 LOC105371045A0A1W2PR82 267 aa20.32■□□□□ 0.84
COL5A1-208ENST00000618395 NEFMP07197 916 aa20.32■□□□□ 0.84
COL5A1-208ENST00000618395 AMER1Q5JTC6 1135 aaPredicted RBP20.3■□□□□ 0.84
COL5A1-208ENST00000618395 NEUROD1Q13562 356 aa20.28■□□□□ 0.84
COL5A1-208ENST00000618395 DNTTIP2Q5QJE6 756 aaKnown RBP20.27■□□□□ 0.83
COL5A1-208ENST00000618395 DDRGK1Q96HY6 314 aa20.27■□□□□ 0.83
COL5A1-208ENST00000618395 ZNF326Q5BKZ1 582 aaKnown RBP20.27■□□□□ 0.83
COL5A1-208ENST00000618395 CCDC136Q96JN2 1154 aa20.21■□□□□ 0.83
COL5A1-208ENST00000618395 BECN1Q14457 450 aa20.17■□□□□ 0.82
COL5A1-208ENST00000618395 PTMAP06454 111 aaKnown RBP20.13■□□□□ 0.81
COL5A1-208ENST00000618395 GOLGA6L22H0YM25 854 aa20.11■□□□□ 0.81
COL5A1-208ENST00000618395 PPM1GO15355 546 aaPredicted RBP20.09■□□□□ 0.81
COL5A1-208ENST00000618395 HNRNPUQ00839 825 aaKnown RBP eCLIP20.05■□□□□ 0.8
COL5A1-208ENST00000618395 DEKP35659 375 aaKnown RBP20.03■□□□□ 0.8
COL5A1-208ENST00000618395 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.03■□□□□ 0.8
COL5A1-208ENST00000618395 TNNT3P45378 269 aaPredicted RBP20.02■□□□□ 0.8
COL5A1-208ENST00000618395 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.02■□□□□ 0.79
COL5A1-208ENST00000618395 CHIC1Q5VXU3 224 aa20■□□□□ 0.79
COL5A1-208ENST00000618395 CHAF1AQ13111 956 aaPredicted RBP19.99■□□□□ 0.79
COL5A1-208ENST00000618395 NOP58Q9Y2X3 529 aaKnown RBP19.97■□□□□ 0.79
COL5A1-208ENST00000618395 FAM50AQ14320 339 aaKnown RBP19.96■□□□□ 0.79
COL5A1-208ENST00000618395 SLC24A1O60721 1099 aa19.94■□□□□ 0.78
COL5A1-208ENST00000618395 MSNP26038 577 aaKnown RBP19.92■□□□□ 0.78
COL5A1-208ENST00000618395 TRIM52Q96A61 297 aa19.92■□□□□ 0.78
COL5A1-208ENST00000618395 L1TD1Q5T7N2 865 aaKnown RBP19.88■□□□□ 0.77
COL5A1-208ENST00000618395 PTMSP20962 102 aa19.87■□□□□ 0.77
COL5A1-208ENST00000618395 CALRP27797 417 aaKnown RBP19.85■□□□□ 0.77
COL5A1-208ENST00000618395 ZRSR1Q15695 479 aaKnown RBP19.82■□□□□ 0.76
COL5A1-208ENST00000618395 ARID4BQ4LE39 1312 aaPredicted RBP19.81■□□□□ 0.76
COL5A1-208ENST00000618395 HSP90AA2PQ14568 343 aaPredicted RBP19.8■□□□□ 0.76
COL5A1-208ENST00000618395 GOLGA6L6A8MZA4 724 aa19.79■□□□□ 0.76
COL5A1-208ENST00000618395 LAS1LQ9Y4W2 734 aaKnown RBP19.79■□□□□ 0.76
COL5A1-208ENST00000618395 FAM9BQ8IZU0 186 aa19.78■□□□□ 0.76
COL5A1-208ENST00000618395 PNNQ9H307 717 aaKnown RBP19.75■□□□□ 0.75
COL5A1-208ENST00000618395 NRDCO43847 1150 aa19.74■□□□□ 0.75
COL5A1-208ENST00000618395 RSPH6AQ9H0K4 717 aa19.74■□□□□ 0.75
COL5A1-208ENST00000618395 IRX6P78412 446 aaPredicted RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms