Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH4P55283 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH4P55283 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH4P55283 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH4P55283 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.76□□□□□ -0.05
CDH4P55283 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.76□□□□□ -0.05
CDH4P55283 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 AL022313.4-201ENST00000562756 2046 ntBASIC14.76□□□□□ -0.05
CDH4P55283 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CDH4P55283 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CDH4P55283 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CDH4P55283 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH4P55283 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH4P55283 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
CDH4P55283 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.75□□□□□ -0.05
CDH4P55283 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
CDH4P55283 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
CDH4P55283 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.75□□□□□ -0.05
CDH4P55283 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
CDH4P55283 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.75□□□□□ -0.05
CDH4P55283 AC073150.1-201ENST00000450406 1084 ntBASIC14.75□□□□□ -0.05
CDH4P55283 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH4P55283 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.75□□□□□ -0.05
CDH4P55283 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 AC093752.3-201ENST00000567343 901 ntBASIC14.75□□□□□ -0.05
CDH4P55283 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.75□□□□□ -0.05
CDH4P55283 ARL16-210ENST00000574938 751 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.75□□□□□ -0.05
CDH4P55283 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.75□□□□□ -0.05
CDH4P55283 AC091812.3-201ENST00000621362 345 ntBASIC14.75□□□□□ -0.05
CDH4P55283 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH4P55283 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.75□□□□□ -0.05
CDH4P55283 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.75□□□□□ -0.05
CDH4P55283 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CDH4P55283 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDH4P55283 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.75□□□□□ -0.05
CDH4P55283 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDH4P55283 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms