Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.29■■■■□ 3.24
CDH4P55283 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
CDH4P55283 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.27■■■■□ 3.08
CDH4P55283 AL356512.1-201ENST00000607453 1739 ntBASIC34.24■■■■□ 3.07
CDH4P55283 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.06
CDH4P55283 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
CDH4P55283 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.04■■■■□ 3.04
CDH4P55283 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.63■■■□□ 2.97
CDH4P55283 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.39■■■□□ 2.94
CDH4P55283 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.33■■■□□ 2.93
CDH4P55283 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.32■■■□□ 2.92
CDH4P55283 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.07■■■□□ 2.88
CDH4P55283 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.99■■■□□ 2.87
CDH4P55283 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.93■■■□□ 2.86
CDH4P55283 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CDH4P55283 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.77■■■□□ 2.84
CDH4P55283 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.72■■■□□ 2.83
CDH4P55283 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.59■■■□□ 2.81
CDH4P55283 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.53■■■□□ 2.8
CDH4P55283 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.46■■■□□ 2.79
CDH4P55283 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
CDH4P55283 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
CDH4P55283 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CDH4P55283 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
CDH4P55283 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CDH4P55283 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CDH4P55283 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
CDH4P55283 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CDH4P55283 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.65■■■□□ 2.66
CDH4P55283 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CDH4P55283 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CDH4P55283 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CDH4P55283 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.57■■■□□ 2.64
CDH4P55283 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.51■■■□□ 2.63
CDH4P55283 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.49■■■□□ 2.63
CDH4P55283 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CDH4P55283 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.4■■■□□ 2.62
CDH4P55283 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
CDH4P55283 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.36■■■□□ 2.61
CDH4P55283 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
CDH4P55283 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CDH4P55283 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
CDH4P55283 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.27■■■□□ 2.6
CDH4P55283 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CDH4P55283 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.19■■■□□ 2.58
CDH4P55283 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
CDH4P55283 AC015813.7-201ENST00000623294 581 ntBASIC31.07■■■□□ 2.56
CDH4P55283 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CDH4P55283 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CDH4P55283 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
CDH4P55283 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CDH4P55283 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CDH4P55283 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.82■■■□□ 2.52
CDH4P55283 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.8■■■□□ 2.52
CDH4P55283 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.79■■■□□ 2.52
CDH4P55283 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CDH4P55283 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.7■■■□□ 2.51
CDH4P55283 AC006077.2-201ENST00000623591 457 ntBASIC30.68■■■□□ 2.5
CDH4P55283 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CDH4P55283 ZNRF2P1-201ENST00000441407 443 ntBASIC30.54■■■□□ 2.48
CDH4P55283 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CDH4P55283 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.52■■■□□ 2.48
CDH4P55283 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CDH4P55283 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CDH4P55283 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
CDH4P55283 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CDH4P55283 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CDH4P55283 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CDH4P55283 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.34■■■□□ 2.45
CDH4P55283 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
CDH4P55283 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CDH4P55283 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CDH4P55283 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CDH4P55283 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CDH4P55283 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
CDH4P55283 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
CDH4P55283 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CDH4P55283 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CDH4P55283 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CDH4P55283 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CDH4P55283 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CDH4P55283 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.03■■■□□ 2.4
CDH4P55283 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CDH4P55283 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.4
CDH4P55283 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.39
CDH4P55283 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
CDH4P55283 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.98■■■□□ 2.39
CDH4P55283 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.98■■■□□ 2.39
CDH4P55283 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.87■■■□□ 2.37
CDH4P55283 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CDH4P55283 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.86■■■□□ 2.37
CDH4P55283 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
CDH4P55283 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CDH4P55283 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.82■■■□□ 2.36
CDH4P55283 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
CDH4P55283 AP002365.1-201ENST00000603448 772 ntBASIC29.81■■■□□ 2.36
CDH4P55283 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.78■■■□□ 2.36
CDH4P55283 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CDH4P55283 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CDH4P55283 AC145285.7-201ENST00000614819 1539 ntBASIC29.75■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms