Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC12.8□□□□□ -0.36
KIAA1549Q9HCM3 AL805961.1-201ENST00000642026 753 ntBASIC12.8□□□□□ -0.36
KIAA1549Q9HCM3 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
KIAA1549Q9HCM3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AC041040.2-201ENST00000622926 2899 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AC027601.5-201ENST00000624065 2482 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AL139158.3-201ENST00000641212 1562 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AC011474.4-201ENST00000623523 2076 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AC139749.1-202ENST00000617529 3139 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 RPL17P11-201ENST00000417593 544 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 AL627422.1-201ENST00000434104 580 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SCARNA12-201ENST00000459155 270 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 MIR3147-201ENST00000577811 66 ntBASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.79□□□□□ -0.36
KIAA1549Q9HCM3 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 IGF1-203ENST00000392904 761 ntTSL 5 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 KRT8P1-201ENST00000557533 1207 ntBASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 NPM1P43-201ENST00000558669 786 ntBASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AC005632.3-201ENST00000605544 308 ntBASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AL009178.2-201ENST00000597278 2719 ntBASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KIAA1549Q9HCM3 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms