RNA–Protein interactions for RNA: ENST00000394949.8

SIN3A-203, Transcript of SIN3 transcription regulator family member A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIN3A, Length 4,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIN3A-203ENST00000394949 DCAF8L2P0C7V8 631 aa29.3■■■□□ 2.28
SIN3A-203ENST00000394949 NISCHQ9Y2I1 1504 aa28.12■■■□□ 2.09
SIN3A-203ENST00000394949 SUPT5HO00267 1087 aaKnown RBP27.91■■■□□ 2.06
SIN3A-203ENST00000394949 PELP1Q8IZL8 1130 aaKnown RBP27.41■■□□□ 1.98
SIN3A-203ENST00000394949 SHROOM4Q9ULL8 1493 aa27.21■■□□□ 1.95
SIN3A-203ENST00000394949 PCGF6Q9BYE7 350 aa26.83■■□□□ 1.89
SIN3A-203ENST00000394949 ZEB1P37275 1124 aaPredicted RBP26.76■■□□□ 1.87
SIN3A-203ENST00000394949 MYT1Q01538 1121 aa26.69■■□□□ 1.86
SIN3A-203ENST00000394949 EHMT2Q96KQ7 1210 aa26.66■■□□□ 1.86
SIN3A-203ENST00000394949 CENPBP07199 599 aaPredicted RBP26.65■■□□□ 1.86
SIN3A-203ENST00000394949 APLP2Q06481 763 aa26.54■■□□□ 1.84
SIN3A-203ENST00000394949 FAM9AQ8IZU1 332 aaPredicted RBP26.2■■□□□ 1.78
SIN3A-203ENST00000394949 CCER1Q8TC90 406 aaPredicted RBP26.13■■□□□ 1.77
SIN3A-203ENST00000394949 ERICH6Q7L0X2 663 aa26.08■■□□□ 1.77
SIN3A-203ENST00000394949 HRCP23327 699 aa26.07■■□□□ 1.76
SIN3A-203ENST00000394949 TRIM41Q8WV44 630 aa25.95■■□□□ 1.75
SIN3A-203ENST00000394949 TTBK1Q5TCY1 1321 aaPredicted RBP25.88■■□□□ 1.73
SIN3A-203ENST00000394949 TRIM26Q12899 539 aaPredicted RBP25.85■■□□□ 1.73
SIN3A-203ENST00000394949 NEFLP07196 543 aa25.72■■□□□ 1.71
SIN3A-203ENST00000394949 YTHDC1Q96MU7 727 aaKnown RBP25.61■■□□□ 1.69
SIN3A-203ENST00000394949 RANGAP1P46060 587 aaPredicted RBP25.61■■□□□ 1.69
SIN3A-203ENST00000394949 UBTFP17480 764 aaKnown RBP25.53■■□□□ 1.68
SIN3A-203ENST00000394949 ATP1B4Q9UN42 357 aaPredicted RBP25.49■■□□□ 1.67
SIN3A-203ENST00000394949 CHIC1Q5VXU3 224 aa25.35■■□□□ 1.65
SIN3A-203ENST00000394949 PPARGC1BQ86YN6 1023 aaKnown RBP25.2■■□□□ 1.63
SIN3A-203ENST00000394949 LOC105371045A0A1W2PR82 267 aa25.12■■□□□ 1.61
SIN3A-203ENST00000394949 DIEXFQ68CQ4 756 aaKnown RBP25.01■■□□□ 1.59
SIN3A-203ENST00000394949 DAXXQ9UER7 740 aaPredicted RBP24.79■■□□□ 1.56
SIN3A-203ENST00000394949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.77■■□□□ 1.56
SIN3A-203ENST00000394949 HNRNPUL2Q1KMD3 747 aaKnown RBP24.75■■□□□ 1.55
SIN3A-203ENST00000394949 GTF3C3Q9Y5Q9 886 aa24.73■■□□□ 1.55
SIN3A-203ENST00000394949 RTL5Q5HYW3 569 aaPredicted RBP24.6■■□□□ 1.53
SIN3A-203ENST00000394949 ITGAEP38570 1179 aa24.6■■□□□ 1.53
SIN3A-203ENST00000394949 ACIN1Q9UKV3 1341 aaKnown RBP24.56■■□□□ 1.52
SIN3A-203ENST00000394949 MYT1LQ9UL68 1186 aa24.55■■□□□ 1.52
SIN3A-203ENST00000394949 ZNF316A6NFI3 1004 aaPredicted RBP24.42■■□□□ 1.5
SIN3A-203ENST00000394949 POLR3GLQ9BT43 218 aa24.35■■□□□ 1.49
SIN3A-203ENST00000394949 CLSPNQ9HAW4 1339 aa24.31■■□□□ 1.48
SIN3A-203ENST00000394949 CDK11AQ9UQ88 783 aaPredicted RBP24.26■■□□□ 1.47
SIN3A-203ENST00000394949 DCAF1Q9Y4B6 1507 aa24.2■■□□□ 1.47
SIN3A-203ENST00000394949 ABCC9O60706 1549 aa24.2■■□□□ 1.47
SIN3A-203ENST00000394949 BCANQ96GW7 911 aa24.2■■□□□ 1.46
SIN3A-203ENST00000394949 ANP32CO43423 234 aa24.18■■□□□ 1.46
SIN3A-203ENST00000394949 PABPN1Q86U42 306 aaKnown RBP eCLIP24.17■■□□□ 1.46
SIN3A-203ENST00000394949 FAM50AQ14320 339 aaKnown RBP24.05■■□□□ 1.44
SIN3A-203ENST00000394949 CNGB1Q14028 1251 aaPredicted RBP24.03■■□□□ 1.44
SIN3A-203ENST00000394949 NEUROD1Q13562 356 aa23.98■■□□□ 1.43
SIN3A-203ENST00000394949 TRIM52Q96A61 297 aa23.93■■□□□ 1.42
SIN3A-203ENST00000394949 SLC4A1APQ9BWU0 796 aaKnown RBP23.92■■□□□ 1.42
SIN3A-203ENST00000394949 SCAF1Q9H7N4 1312 aaKnown RBP23.87■■□□□ 1.41
SIN3A-203ENST00000394949 ANP32AP39687 249 aaKnown RBP23.86■■□□□ 1.41
SIN3A-203ENST00000394949 CSRNP3Q8WYN3 585 aa23.76■■□□□ 1.39
SIN3A-203ENST00000394949 FKBP8Q14318 412 aa23.73■■□□□ 1.39
SIN3A-203ENST00000394949 FBLN2P98095 1184 aa23.69■■□□□ 1.38
SIN3A-203ENST00000394949 ZNF326Q5BKZ1 582 aaKnown RBP23.58■■□□□ 1.36
SIN3A-203ENST00000394949 P3H3Q8IVL6 736 aa23.47■■□□□ 1.35
SIN3A-203ENST00000394949 HNRNPUQ00839 825 aaKnown RBP eCLIP23.45■■□□□ 1.34
SIN3A-203ENST00000394949 MIER1Q8N108 512 aa23.44■■□□□ 1.34
SIN3A-203ENST00000394949 ZBTB47Q9UFB7 747 aaPredicted RBP23.43■■□□□ 1.34
SIN3A-203ENST00000394949 NPM2Q86SE8 214 aaKnown RBP23.43■■□□□ 1.34
SIN3A-203ENST00000394949 ZCCHC6Q5VYS8 1495 aaKnown RBP23.43■■□□□ 1.34
SIN3A-203ENST00000394949 TONSLQ96HA7 1378 aa23.42■■□□□ 1.34
SIN3A-203ENST00000394949 CANXP27824 592 aaKnown RBP23.41■■□□□ 1.34
SIN3A-203ENST00000394949 EIF5BO60841 1220 aaKnown RBP23.4■■□□□ 1.34
SIN3A-203ENST00000394949 DDX10Q13206 875 aaKnown RBP23.4■■□□□ 1.34
SIN3A-203ENST00000394949 CCDC180Q9P1Z9 1646 aa23.39■■□□□ 1.33
SIN3A-203ENST00000394949 GLIPR1L2Q4G1C9 344 aa23.37■■□□□ 1.33
SIN3A-203ENST00000394949 ANP32EQ9BTT0 268 aa23.33■■□□□ 1.33
SIN3A-203ENST00000394949 ARID3CA6NKF2 412 aa23.33■■□□□ 1.32
SIN3A-203ENST00000394949 MYO15BQ96JP2 1530 aa23.3■■□□□ 1.32
SIN3A-203ENST00000394949 ZNF777Q9ULD5 760 aaPredicted RBP23.29■■□□□ 1.32
SIN3A-203ENST00000394949 SCRIBQ14160 1630 aa23.28■■□□□ 1.32
SIN3A-203ENST00000394949 NEFMP07197 916 aa23.28■■□□□ 1.32
SIN3A-203ENST00000394949 CCDC136Q96JN2 1154 aa23.27■■□□□ 1.32
SIN3A-203ENST00000394949 ANP32BQ92688 251 aaKnown RBP23.27■■□□□ 1.32
SIN3A-203ENST00000394949 FAM9BQ8IZU0 186 aa23.21■■□□□ 1.31
SIN3A-203ENST00000394949 UPF2Q9HAU5 1272 aaKnown RBP23.21■■□□□ 1.31
SIN3A-203ENST00000394949 NBR1Q14596 966 aa23.21■■□□□ 1.31
SIN3A-203ENST00000394949 ESF1Q9H501 851 aaKnown RBP23.08■■□□□ 1.29
SIN3A-203ENST00000394949 MRS2Q9HD23 443 aa23.08■■□□□ 1.29
SIN3A-203ENST00000394949 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.08■■□□□ 1.28
SIN3A-203ENST00000394949 TMC1Q8TDI8 760 aa23.06■■□□□ 1.28
SIN3A-203ENST00000394949 NPM1P06748 294 aaKnown RBP eCLIP23.06■■□□□ 1.28
SIN3A-203ENST00000394949 SLC24A1O60721 1099 aa23.06■■□□□ 1.28
SIN3A-203ENST00000394949 EEA1Q15075 1411 aa23.05■■□□□ 1.28
SIN3A-203ENST00000394949 HSP90AA1P07900 732 aaKnown RBP23.04■■□□□ 1.28
SIN3A-203ENST00000394949 CLIP1P30622 1438 aa23.03■■□□□ 1.28
SIN3A-203ENST00000394949 DDRGK1Q96HY6 314 aa23■■□□□ 1.27
SIN3A-203ENST00000394949 CEP162Q5TB80 1403 aa22.97■■□□□ 1.27
SIN3A-203ENST00000394949 CHGAP10645 457 aaKnown RBP22.95■■□□□ 1.26
SIN3A-203ENST00000394949 IRX6P78412 446 aaPredicted RBP22.95■■□□□ 1.26
SIN3A-203ENST00000394949 STAG3Q9UJ98 1225 aa22.94■■□□□ 1.26
SIN3A-203ENST00000394949 SUPT16HQ9Y5B9 1047 aaKnown RBP22.92■■□□□ 1.26
SIN3A-203ENST00000394949 EIF4G2P78344 907 aaKnown RBP eCLIP22.92■■□□□ 1.26
SIN3A-203ENST00000394949 GOLGA3Q08378 1498 aa22.91■■□□□ 1.26
SIN3A-203ENST00000394949 TSPY4P0CV99 314 aa22.9■■□□□ 1.26
SIN3A-203ENST00000394949 TSPY10P0CW01 314 aa22.9■■□□□ 1.26
SIN3A-203ENST00000394949 BCL11AQ9H165 835 aa22.88■■□□□ 1.25
SIN3A-203ENST00000394949 PPM1GO15355 546 aaPredicted RBP22.86■■□□□ 1.25
SIN3A-203ENST00000394949 CHIC2Q9UKJ5 165 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms