RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 NISCHQ9Y2I1 1504 aa28.48■■■□□ 2.15
LMNA-201ENST00000347559 HRCP23327 699 aa25.97■■□□□ 1.75
LMNA-201ENST00000347559 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
LMNA-201ENST00000347559 SUPT5HO00267 1087 aaKnown RBP25.7■■□□□ 1.7
LMNA-201ENST00000347559 PPARGC1BQ86YN6 1023 aaKnown RBP25.61■■□□□ 1.69
LMNA-201ENST00000347559 PCGF6Q9BYE7 350 aa25.58■■□□□ 1.69
LMNA-201ENST00000347559 MYO15BQ96JP2 1530 aa25.23■■□□□ 1.63
LMNA-201ENST00000347559 CHIC1Q5VXU3 224 aa25.11■■□□□ 1.61
LMNA-201ENST00000347559 PELP1Q8IZL8 1130 aaKnown RBP25.07■■□□□ 1.6
LMNA-201ENST00000347559 LOC105371045A0A1W2PR82 267 aa24.69■■□□□ 1.54
LMNA-201ENST00000347559 SCAF1Q9H7N4 1312 aaKnown RBP24.67■■□□□ 1.54
LMNA-201ENST00000347559 TRIM26Q12899 539 aaPredicted RBP24.58■■□□□ 1.53
LMNA-201ENST00000347559 DCAF1Q9Y4B6 1507 aa24.58■■□□□ 1.53
LMNA-201ENST00000347559 ZEB1P37275 1124 aaPredicted RBP24.35■■□□□ 1.49
LMNA-201ENST00000347559 DCAF8L2P0C7V8 631 aa24.27■■□□□ 1.48
LMNA-201ENST00000347559 CCDC180Q9P1Z9 1646 aa24.26■■□□□ 1.47
LMNA-201ENST00000347559 ZCCHC6Q5VYS8 1495 aaKnown RBP24.2■■□□□ 1.46
LMNA-201ENST00000347559 MYT1Q01538 1121 aa24.07■■□□□ 1.44
LMNA-201ENST00000347559 ACIN1Q9UKV3 1341 aaKnown RBP24.01■■□□□ 1.43
LMNA-201ENST00000347559 NEUROD1Q13562 356 aa24■■□□□ 1.43
LMNA-201ENST00000347559 GTF3C3Q9Y5Q9 886 aa23.92■■□□□ 1.42
LMNA-201ENST00000347559 EHMT2Q96KQ7 1210 aa23.88■■□□□ 1.41
LMNA-201ENST00000347559 FAM9AQ8IZU1 332 aaPredicted RBP23.83■■□□□ 1.4
LMNA-201ENST00000347559 CENPBP07199 599 aaPredicted RBP23.75■■□□□ 1.39
LMNA-201ENST00000347559 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.69■■□□□ 1.38
LMNA-201ENST00000347559 TRIM41Q8WV44 630 aa23.65■■□□□ 1.38
LMNA-201ENST00000347559 CCER1Q8TC90 406 aaPredicted RBP23.64■■□□□ 1.37
LMNA-201ENST00000347559 DIEXFQ68CQ4 756 aaKnown RBP23.63■■□□□ 1.37
LMNA-201ENST00000347559 YTHDC1Q96MU7 727 aaKnown RBP23.44■■□□□ 1.34
LMNA-201ENST00000347559 TTBK1Q5TCY1 1321 aaPredicted RBP23.31■■□□□ 1.32
LMNA-201ENST00000347559 ZNF316A6NFI3 1004 aaPredicted RBP23.1■■□□□ 1.29
LMNA-201ENST00000347559 RSF1Q96T23 1441 aaPredicted RBP23.05■■□□□ 1.28
LMNA-201ENST00000347559 MIER1Q8N108 512 aa23.03■■□□□ 1.28
LMNA-201ENST00000347559 ABCC9O60706 1549 aa22.99■■□□□ 1.27
LMNA-201ENST00000347559 RB1CC1Q8TDY2 1594 aa22.97■■□□□ 1.27
LMNA-201ENST00000347559 BCL11AQ9H165 835 aa22.7■■□□□ 1.22
LMNA-201ENST00000347559 SUPT16HQ9Y5B9 1047 aaKnown RBP22.67■■□□□ 1.22
LMNA-201ENST00000347559 SCRIBQ14160 1630 aa22.67■■□□□ 1.22
LMNA-201ENST00000347559 HNRNPUL2Q1KMD3 747 aaKnown RBP22.66■■□□□ 1.22
LMNA-201ENST00000347559 ANP32EQ9BTT0 268 aa22.66■■□□□ 1.22
LMNA-201ENST00000347559 TSHZ2Q9NRE2 1034 aa22.59■■□□□ 1.21
LMNA-201ENST00000347559 CEP162Q5TB80 1403 aa22.55■■□□□ 1.2
LMNA-201ENST00000347559 WRNQ14191 1432 aaPredicted RBP eCLIP22.53■■□□□ 1.25e-6■■■■□ 20.9
LMNA-201ENST00000347559 UBTFP17480 764 aaKnown RBP22.5■■□□□ 1.19
LMNA-201ENST00000347559 CSRNP3Q8WYN3 585 aa22.48■■□□□ 1.19
LMNA-201ENST00000347559 CLSPNQ9HAW4 1339 aa22.43■■□□□ 1.18
LMNA-201ENST00000347559 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
LMNA-201ENST00000347559 BCANQ96GW7 911 aa22.4■■□□□ 1.18
LMNA-201ENST00000347559 MROH2BQ7Z745 1585 aa22.34■■□□□ 1.17
LMNA-201ENST00000347559 TNIKQ9UKE5 1360 aa22.32■■□□□ 1.16
LMNA-201ENST00000347559 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
LMNA-201ENST00000347559 SOGA1O94964 1423 aa22.28■■□□□ 1.16
LMNA-201ENST00000347559 WIZO95785 1651 aa22.26■■□□□ 1.15
LMNA-201ENST00000347559 ABCC8Q09428 1581 aa22.26■■□□□ 1.15
LMNA-201ENST00000347559 APLP2Q06481 763 aa22.16■■□□□ 1.14
LMNA-201ENST00000347559 FKBP8Q14318 412 aa22.16■■□□□ 1.14
LMNA-201ENST00000347559 KCNH8Q96L42 1107 aa22.16■■□□□ 1.14
LMNA-201ENST00000347559 RANGAP1P46060 587 aaPredicted RBP22.15■■□□□ 1.14
LMNA-201ENST00000347559 RUSC2Q8N2Y8 1516 aa22.13■■□□□ 1.13
LMNA-201ENST00000347559 RBM19Q9Y4C8 960 aaKnown RBP22.08■■□□□ 1.12
LMNA-201ENST00000347559 EIF4G1Q04637 1599 aaKnown RBP22.06■■□□□ 1.12
LMNA-201ENST00000347559 GOLGA3Q08378 1498 aa22.02■■□□□ 1.12
LMNA-201ENST00000347559 ITGAEP38570 1179 aa22.02■■□□□ 1.12
LMNA-201ENST00000347559 BAZ1AQ9NRL2 1556 aaPredicted RBP21.98■■□□□ 1.11
LMNA-201ENST00000347559 NEFLP07196 543 aa21.97■■□□□ 1.11
LMNA-201ENST00000347559 DHX57Q6P158 1386 aaKnown RBP21.97■■□□□ 1.11
LMNA-201ENST00000347559 EEA1Q15075 1411 aa21.95■■□□□ 1.1
LMNA-201ENST00000347559 CLIP1P30622 1438 aa21.95■■□□□ 1.1
LMNA-201ENST00000347559 MSH5O43196 834 aa21.86■■□□□ 1.09
LMNA-201ENST00000347559 VPS8Q8N3P4 1428 aa21.86■■□□□ 1.09
LMNA-201ENST00000347559 ERICH6Q7L0X2 663 aa21.84■■□□□ 1.09
LMNA-201ENST00000347559 TRIM52Q96A61 297 aa21.84■■□□□ 1.09
LMNA-201ENST00000347559 DDX10Q13206 875 aaKnown RBP21.83■■□□□ 1.09
LMNA-201ENST00000347559 NACADO15069 1562 aa21.78■■□□□ 1.08
LMNA-201ENST00000347559 CEP164Q9UPV0 1460 aa21.77■■□□□ 1.08
LMNA-201ENST00000347559 TOP2AP11388 1531 aaKnown RBP21.73■■□□□ 1.07
LMNA-201ENST00000347559 PRKCSHP14314 528 aaPredicted RBP21.72■■□□□ 1.07
LMNA-201ENST00000347559 SMARCA2P51531 1590 aa21.71■■□□□ 1.07
LMNA-201ENST00000347559 KANK4Q5T7N3 995 aaPredicted RBP21.68■■□□□ 1.06
LMNA-201ENST00000347559 HIRIP3Q9BW71 556 aaPredicted RBP21.67■■□□□ 1.06
LMNA-201ENST00000347559 IRX6P78412 446 aaPredicted RBP21.64■■□□□ 1.06
LMNA-201ENST00000347559 RAPGEF2Q9Y4G8 1499 aa21.62■■□□□ 1.05
LMNA-201ENST00000347559 CDK11AQ9UQ88 783 aaPredicted RBP21.61■■□□□ 1.05
LMNA-201ENST00000347559 KIF21BO75037 1637 aa21.6■■□□□ 1.05
LMNA-201ENST00000347559 FANCIQ9NVI1 1328 aa21.57■■□□□ 1.04
LMNA-201ENST00000347559 ANP32CO43423 234 aa21.56■■□□□ 1.04
LMNA-201ENST00000347559 DEKP35659 375 aaKnown RBP21.55■■□□□ 1.04
LMNA-201ENST00000347559 SIN3AQ96ST3 1273 aa21.53■■□□□ 1.04
LMNA-201ENST00000347559 PPP1R15AO75807 674 aaPredicted RBP21.5■■□□□ 1.03
LMNA-201ENST00000347559 BAZ1BQ9UIG0 1483 aaKnown RBP21.48■■□□□ 1.03
LMNA-201ENST00000347559 SMARCA4P51532 1647 aa21.46■■□□□ 1.03
LMNA-201ENST00000347559 RAB3GAP2Q9H2M9 1393 aa21.45■■□□□ 1.02
LMNA-201ENST00000347559 CCER2I3L3R5 266 aa21.45■■□□□ 1.02
LMNA-201ENST00000347559 CCNB3Q8WWL7 1395 aa21.45■■□□□ 1.02
LMNA-201ENST00000347559 SYNJ1O43426 1573 aa21.45■■□□□ 1.02
LMNA-201ENST00000347559 HNRNPUQ00839 825 aaKnown RBP eCLIP21.43■■□□□ 1.02
LMNA-201ENST00000347559 NBR1Q14596 966 aa21.43■■□□□ 1.02
LMNA-201ENST00000347559 WDR97A6NE52 1622 aa21.41■■□□□ 1.02
LMNA-201ENST00000347559 RRBP1Q9P2E9 1410 aaKnown RBP21.41■■□□□ 1.02
LMNA-201ENST00000347559 MYT1LQ9UL68 1186 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms