Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
VCANP13611 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.56□□□□□ -0.08
VCANP13611 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
VCANP13611 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC14.56□□□□□ -0.08
VCANP13611 AC017100.1-201ENST00000565978 1169 ntBASIC14.56□□□□□ -0.08
VCANP13611 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
VCANP13611 TUBA3GP-201ENST00000410028 1325 ntBASIC14.56□□□□□ -0.08
VCANP13611 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
VCANP13611 POLR3DP1-201ENST00000398689 1176 ntBASIC14.56□□□□□ -0.08
VCANP13611 ST13P19-201ENST00000442505 1124 ntBASIC14.56□□□□□ -0.08
VCANP13611 ATP5G1P7-201ENST00000444398 400 ntBASIC14.56□□□□□ -0.08
VCANP13611 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC14.56□□□□□ -0.08
VCANP13611 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
VCANP13611 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
VCANP13611 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 MKL1-204ENST00000402630 747 ntTSL 2 BASIC14.56□□□□□ -0.08
VCANP13611 CNN2P1-201ENST00000453616 918 ntBASIC14.56□□□□□ -0.08
VCANP13611 RNA5SP420-201ENST00000516997 137 ntBASIC14.56□□□□□ -0.08
VCANP13611 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC14.56□□□□□ -0.08
VCANP13611 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.56□□□□□ -0.08
VCANP13611 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VCANP13611 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC14.55□□□□□ -0.08
VCANP13611 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.55□□□□□ -0.08
VCANP13611 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC14.55□□□□□ -0.08
VCANP13611 FTLP3-201ENST00000427242 528 ntBASIC14.55□□□□□ -0.08
VCANP13611 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC14.55□□□□□ -0.08
VCANP13611 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 KRT8P18-201ENST00000413425 1445 ntBASIC14.55□□□□□ -0.08
VCANP13611 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.55□□□□□ -0.08
VCANP13611 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VCANP13611 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VCANP13611 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
VCANP13611 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 LINC01508-201ENST00000425666 1013 ntTSL 3 BASIC14.54□□□□□ -0.08
VCANP13611 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms