RNA–Protein interactions for RNA: ENST00000456090.2

SMCR2-201, Transcript of Smith-Magenis syndrome chromosome region, candidate 2, humanhuman

TSL 2 BASIC

Gene SMCR2, Length 564 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCR2-201ENST00000456090 NISCHQ9Y2I1 1504 aa30.85■■■□□ 2.53
SMCR2-201ENST00000456090 CCDC180Q9P1Z9 1646 aa27.67■■■□□ 2.02
SMCR2-201ENST00000456090 ABCC9O60706 1549 aa27.43■■□□□ 1.98
SMCR2-201ENST00000456090 RB1CC1Q8TDY2 1594 aa26.21■■□□□ 1.79
SMCR2-201ENST00000456090 NACADO15069 1562 aa26.07■■□□□ 1.76
SMCR2-201ENST00000456090 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
SMCR2-201ENST00000456090 UNC13AQ9UPW8 1703 aa25.74■■□□□ 1.71
SMCR2-201ENST00000456090 MYO15BQ96JP2 1530 aa25.73■■□□□ 1.71
SMCR2-201ENST00000456090 ZCCHC6Q5VYS8 1495 aaKnown RBP25.61■■□□□ 1.69
SMCR2-201ENST00000456090 PABPN1Q86U42 306 aaKnown RBP eCLIP25.55■■□□□ 1.68
SMCR2-201ENST00000456090 DNAJC5BQ9UF47 199 aa25.53■■□□□ 1.68
SMCR2-201ENST00000456090 DCAF1Q9Y4B6 1507 aa25.48■■□□□ 1.67
SMCR2-201ENST00000456090 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
SMCR2-201ENST00000456090 SCRIBQ14160 1630 aa25.22■■□□□ 1.63
SMCR2-201ENST00000456090 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
SMCR2-201ENST00000456090 CC2D2AQ9P2K1 1620 aa24.83■■□□□ 1.56
SMCR2-201ENST00000456090 EIF4G1Q04637 1599 aaKnown RBP24.81■■□□□ 1.56
SMCR2-201ENST00000456090 CECR2Q9BXF3 1484 aa24.69■■□□□ 1.54
SMCR2-201ENST00000456090 SMARCA4P51532 1647 aa24.06■■□□□ 1.44
SMCR2-201ENST00000456090 NCAPD3P42695 1498 aa24.02■■□□□ 1.44
SMCR2-201ENST00000456090 ATAD2BQ9ULI0 1458 aa23.99■■□□□ 1.43
SMCR2-201ENST00000456090 SMARCA2P51531 1590 aa23.96■■□□□ 1.43
SMCR2-201ENST00000456090 BAZ1AQ9NRL2 1556 aaPredicted RBP23.95■■□□□ 1.42
SMCR2-201ENST00000456090 HMGXB3Q12766 1538 aa23.9■■□□□ 1.42
SMCR2-201ENST00000456090 PEG3Q9GZU2 1588 aa23.81■■□□□ 1.4
SMCR2-201ENST00000456090 BAZ1BQ9UIG0 1483 aaKnown RBP23.79■■□□□ 1.4
SMCR2-201ENST00000456090 MROH2BQ7Z745 1585 aa23.78■■□□□ 1.4
SMCR2-201ENST00000456090 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
SMCR2-201ENST00000456090 NESP48681 1621 aa23.63■■□□□ 1.37
SMCR2-201ENST00000456090 CUX2O14529 1486 aa23.56■■□□□ 1.36
SMCR2-201ENST00000456090 WIZO95785 1651 aa23.55■■□□□ 1.36
SMCR2-201ENST00000456090 LAMC3Q9Y6N6 1575 aa23.5■■□□□ 1.35
SMCR2-201ENST00000456090 KIF21AQ7Z4S6 1674 aa23.41■■□□□ 1.34
SMCR2-201ENST00000456090 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
SMCR2-201ENST00000456090 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.32
SMCR2-201ENST00000456090 PDS5BQ9NTI5 1447 aa23.33■■□□□ 1.32
SMCR2-201ENST00000456090 DNAJC5Q9H3Z4 198 aa23.31■■□□□ 1.32
SMCR2-201ENST00000456090 CADPSQ9ULU8 1353 aa23.3■■□□□ 1.32
SMCR2-201ENST00000456090 TOP2AP11388 1531 aaKnown RBP23.23■■□□□ 1.31
SMCR2-201ENST00000456090 MRC2Q9UBG0 1479 aa23.12■■□□□ 1.29
SMCR2-201ENST00000456090 CFTRP13569 1480 aa23.09■■□□□ 1.29
SMCR2-201ENST00000456090 WDR62O43379 1518 aa23.08■■□□□ 1.29
SMCR2-201ENST00000456090 CEP164Q9UPV0 1460 aa23.08■■□□□ 1.29
SMCR2-201ENST00000456090 FANCD2Q9BXW9 1451 aa23.06■■□□□ 1.28
SMCR2-201ENST00000456090 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
SMCR2-201ENST00000456090 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
SMCR2-201ENST00000456090 URB2Q14146 1524 aaKnown RBP22.87■■□□□ 1.25
SMCR2-201ENST00000456090 TOPBP1Q92547 1522 aa22.65■■□□□ 1.22
SMCR2-201ENST00000456090 ABCC8Q09428 1581 aa22.6■■□□□ 1.21
SMCR2-201ENST00000456090 DNMBPQ6XZF7 1577 aa22.6■■□□□ 1.21
SMCR2-201ENST00000456090 IFT140Q96RY7 1462 aa22.6■■□□□ 1.21
SMCR2-201ENST00000456090 ZNF608Q9ULD9 1512 aaPredicted RBP22.56■■□□□ 1.2
SMCR2-201ENST00000456090 OSCARQ8IYS5 282 aa22.49■■□□□ 1.19
SMCR2-201ENST00000456090 EIF4G3O43432 1585 aaKnown RBP22.49■■□□□ 1.19
SMCR2-201ENST00000456090 TARBP1Q13395 1621 aaKnown RBP22.47■■□□□ 1.19
SMCR2-201ENST00000456090 SUPT5HO00267 1087 aaKnown RBP22.44■■□□□ 1.18
SMCR2-201ENST00000456090 POLA1P09884 1462 aaPredicted RBP22.43■■□□□ 1.18
SMCR2-201ENST00000456090 TRIM41Q8WV44 630 aa22.39■■□□□ 1.17
SMCR2-201ENST00000456090 AQRO60306 1485 aaKnown RBP eCLIP22.36■■□□□ 1.17
SMCR2-201ENST00000456090 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
SMCR2-201ENST00000456090 CUX1P39880 1505 aa22.34■■□□□ 1.17
SMCR2-201ENST00000456090 CHD1O14646 1710 aa22.34■■□□□ 1.17
SMCR2-201ENST00000456090 FGD5Q6ZNL6 1462 aa22.32■■□□□ 1.16
SMCR2-201ENST00000456090 SOGA1O94964 1423 aa22.31■■□□□ 1.16
SMCR2-201ENST00000456090 RIMBP3CA6NJZ7 1639 aa22.25■■□□□ 1.15
SMCR2-201ENST00000456090 RIMBP3BA6NNM3 1639 aa22.25■■□□□ 1.15
SMCR2-201ENST00000456090 RIMBP3Q9UFD9 1639 aa22.25■■□□□ 1.15
SMCR2-201ENST00000456090 TDRD9Q8NDG6 1382 aaKnown RBP22.25■■□□□ 1.15
SMCR2-201ENST00000456090 WDR97A6NE52 1622 aa22.24■■□□□ 1.15
SMCR2-201ENST00000456090 FBLN2P98095 1184 aa22.18■■□□□ 1.14
SMCR2-201ENST00000456090 ARHGEF11O15085 1522 aa22.17■■□□□ 1.14
SMCR2-201ENST00000456090 SNAPC4Q5SXM2 1469 aa22.15■■□□□ 1.14
SMCR2-201ENST00000456090 PBRM1Q86U86 1689 aa22.14■■□□□ 1.14
SMCR2-201ENST00000456090 GRIN2BQ13224 1484 aa22.1■■□□□ 1.13
SMCR2-201ENST00000456090 MAGI1Q96QZ7 1491 aaPredicted RBP22.1■■□□□ 1.13
SMCR2-201ENST00000456090 BIVM-ERCC5R4GMW8 1640 aa22.07■■□□□ 1.12
SMCR2-201ENST00000456090 GAPVD1Q14C86 1478 aa22.07■■□□□ 1.12
SMCR2-201ENST00000456090 ABCA10Q8WWZ4 1543 aa22.06■■□□□ 1.12
SMCR2-201ENST00000456090 ABCA5Q8WWZ7 1642 aa22.06■■□□□ 1.12
SMCR2-201ENST00000456090 TOP2BQ02880 1626 aa22.05■■□□□ 1.12
SMCR2-201ENST00000456090 CHMP7Q8WUX9 453 aaPredicted RBP22.04■■□□□ 1.12
SMCR2-201ENST00000456090 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
SMCR2-201ENST00000456090 SYNJ2O15056 1496 aa22.03■■□□□ 1.12
SMCR2-201ENST00000456090 WRNQ14191 1432 aaPredicted RBP eCLIP22.01■■□□□ 1.11
SMCR2-201ENST00000456090 CLASP1Q7Z460 1538 aa22■■□□□ 1.11
SMCR2-201ENST00000456090 CYB5RLQ6IPT4 315 aa21.97■■□□□ 1.11
SMCR2-201ENST00000456090 ARAP1Q96P48 1450 aa21.96■■□□□ 1.11
SMCR2-201ENST00000456090 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
SMCR2-201ENST00000456090 GRIN2AQ12879 1464 aa21.83■■□□□ 1.09
SMCR2-201ENST00000456090 ERICH3Q5RHP9 1530 aa21.81■■□□□ 1.08
SMCR2-201ENST00000456090 FHAD1B1AJZ9 1412 aa21.78■■□□□ 1.08
SMCR2-201ENST00000456090 CEP170Q5SW79 1584 aa21.78■■□□□ 1.08
SMCR2-201ENST00000456090 NUP160Q12769 1436 aa21.74■■□□□ 1.07
SMCR2-201ENST00000456090 ERCC6L2Q5T890 1561 aa21.69■■□□□ 1.06
SMCR2-201ENST00000456090 SHROOM2Q13796 1616 aa21.67■■□□□ 1.06
SMCR2-201ENST00000456090 TRHP20396 242 aaPredicted RBP21.67■■□□□ 1.06
SMCR2-201ENST00000456090 KIF27Q86VH2 1401 aa21.58■■□□□ 1.05
SMCR2-201ENST00000456090 RUSC2Q8N2Y8 1516 aa21.57■■□□□ 1.04
SMCR2-201ENST00000456090 CUL7Q14999 1698 aa21.56■■□□□ 1.04
SMCR2-201ENST00000456090 IGF1RP08069 1367 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms