RNA–Protein interactions for RNA: ENST00000542068.5

CNOT9-208, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CNOT9, Length 3,259 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-208ENST00000542068 NISCHQ9Y2I1 1504 aa30.43■■■□□ 2.46
CNOT9-208ENST00000542068 SHROOM4Q9ULL8 1493 aa27.06■■□□□ 1.92
CNOT9-208ENST00000542068 DCAF8L2P0C7V8 631 aa26.8■■□□□ 1.88
CNOT9-208ENST00000542068 SUPT5HO00267 1087 aaKnown RBP26.61■■□□□ 1.85
CNOT9-208ENST00000542068 ZCCHC6Q5VYS8 1495 aaKnown RBP25.6■■□□□ 1.69
CNOT9-208ENST00000542068 PCGF6Q9BYE7 350 aa25.48■■□□□ 1.67
CNOT9-208ENST00000542068 CHIC1Q5VXU3 224 aa25.48■■□□□ 1.67
CNOT9-208ENST00000542068 MYO15BQ96JP2 1530 aa25.42■■□□□ 1.66
CNOT9-208ENST00000542068 CCDC180Q9P1Z9 1646 aa25.39■■□□□ 1.65
CNOT9-208ENST00000542068 HRCP23327 699 aa25.38■■□□□ 1.65
CNOT9-208ENST00000542068 PPARGC1BQ86YN6 1023 aaKnown RBP25.26■■□□□ 1.63
CNOT9-208ENST00000542068 LOC105371045A0A1W2PR82 267 aa25.11■■□□□ 1.61
CNOT9-208ENST00000542068 EHMT2Q96KQ7 1210 aa24.96■■□□□ 1.59
CNOT9-208ENST00000542068 FAM9AQ8IZU1 332 aaPredicted RBP24.78■■□□□ 1.56
CNOT9-208ENST00000542068 ABCC9O60706 1549 aa24.69■■□□□ 1.54
CNOT9-208ENST00000542068 SCRIBQ14160 1630 aa24.58■■□□□ 1.53
CNOT9-208ENST00000542068 TRIM41Q8WV44 630 aa24.52■■□□□ 1.52
CNOT9-208ENST00000542068 TRIM26Q12899 539 aaPredicted RBP24.5■■□□□ 1.51
CNOT9-208ENST00000542068 DCAF1Q9Y4B6 1507 aa24.48■■□□□ 1.51
CNOT9-208ENST00000542068 RSF1Q96T23 1441 aaPredicted RBP24.27■■□□□ 1.48
CNOT9-208ENST00000542068 CECR2Q9BXF3 1484 aa24.08■■□□□ 1.45
CNOT9-208ENST00000542068 TTBK1Q5TCY1 1321 aaPredicted RBP24.06■■□□□ 1.44
CNOT9-208ENST00000542068 ZEB1P37275 1124 aaPredicted RBP23.99■■□□□ 1.43
CNOT9-208ENST00000542068 RB1CC1Q8TDY2 1594 aa23.98■■□□□ 1.43
CNOT9-208ENST00000542068 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.432e-6■■■□□ 19.1
CNOT9-208ENST00000542068 MROH2BQ7Z745 1585 aa23.84■■□□□ 1.41
CNOT9-208ENST00000542068 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.83■■□□□ 1.41
CNOT9-208ENST00000542068 SCAF1Q9H7N4 1312 aaKnown RBP23.82■■□□□ 1.4
CNOT9-208ENST00000542068 NACADO15069 1562 aa23.78■■□□□ 1.4
CNOT9-208ENST00000542068 CCER1Q8TC90 406 aaPredicted RBP23.72■■□□□ 1.39
CNOT9-208ENST00000542068 WIZO95785 1651 aa23.67■■□□□ 1.38
CNOT9-208ENST00000542068 RANGAP1P46060 587 aaPredicted RBP23.61■■□□□ 1.37
CNOT9-208ENST00000542068 UBTFP17480 764 aaKnown RBP23.57■■□□□ 1.36
CNOT9-208ENST00000542068 NEUROD1Q13562 356 aa23.43■■□□□ 1.34
CNOT9-208ENST00000542068 PELP1Q8IZL8 1130 aaKnown RBP23.42■■□□□ 1.34
CNOT9-208ENST00000542068 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
CNOT9-208ENST00000542068 ABCC8Q09428 1581 aa23.36■■□□□ 1.33
CNOT9-208ENST00000542068 BAZ1AQ9NRL2 1556 aaPredicted RBP23.36■■□□□ 1.33
CNOT9-208ENST00000542068 ACIN1Q9UKV3 1341 aaKnown RBP23.34■■□□□ 1.33
CNOT9-208ENST00000542068 GTF3C3Q9Y5Q9 886 aa23.29■■□□□ 1.32
CNOT9-208ENST00000542068 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
CNOT9-208ENST00000542068 YTHDC1Q96MU7 727 aaKnown RBP23.26■■□□□ 1.31
CNOT9-208ENST00000542068 SOGA1O94964 1423 aa23.22■■□□□ 1.31
CNOT9-208ENST00000542068 CSRNP3Q8WYN3 585 aa23.21■■□□□ 1.31
CNOT9-208ENST00000542068 CENPBP07199 599 aaPredicted RBP23.17■■□□□ 1.3
CNOT9-208ENST00000542068 HNRNPUL2Q1KMD3 747 aaKnown RBP23.12■■□□□ 1.29
CNOT9-208ENST00000542068 SMARCA4P51532 1647 aa23.12■■□□□ 1.29
CNOT9-208ENST00000542068 RUSC2Q8N2Y8 1516 aa23.09■■□□□ 1.29
CNOT9-208ENST00000542068 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.29
CNOT9-208ENST00000542068 CEP162Q5TB80 1403 aa23.05■■□□□ 1.28
CNOT9-208ENST00000542068 APLP2Q06481 763 aa23.03■■□□□ 1.28
CNOT9-208ENST00000542068 SMARCA2P51531 1590 aa23■■□□□ 1.27
CNOT9-208ENST00000542068 ZNF316A6NFI3 1004 aaPredicted RBP22.96■■□□□ 1.27
CNOT9-208ENST00000542068 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
CNOT9-208ENST00000542068 UNC13AQ9UPW8 1703 aa22.92■■□□□ 1.26
CNOT9-208ENST00000542068 MIER1Q8N108 512 aa22.86■■□□□ 1.25
CNOT9-208ENST00000542068 TNIKQ9UKE5 1360 aa22.82■■□□□ 1.24
CNOT9-208ENST00000542068 BAZ1BQ9UIG0 1483 aaKnown RBP22.82■■□□□ 1.24
CNOT9-208ENST00000542068 BICRAQ9NZM4 1560 aa22.79■■□□□ 1.24
CNOT9-208ENST00000542068 EIF4G1Q04637 1599 aaKnown RBP22.77■■□□□ 1.24
CNOT9-208ENST00000542068 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
CNOT9-208ENST00000542068 GOLGA3Q08378 1498 aa22.72■■□□□ 1.23
CNOT9-208ENST00000542068 ITGAEP38570 1179 aa22.71■■□□□ 1.23
CNOT9-208ENST00000542068 CLIP1P30622 1438 aa22.67■■□□□ 1.22
CNOT9-208ENST00000542068 ATP1B4Q9UN42 357 aaPredicted RBP22.66■■□□□ 1.22
CNOT9-208ENST00000542068 EEA1Q15075 1411 aa22.66■■□□□ 1.22
CNOT9-208ENST00000542068 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
CNOT9-208ENST00000542068 CEP164Q9UPV0 1460 aa22.56■■□□□ 1.2
CNOT9-208ENST00000542068 RAPGEF2Q9Y4G8 1499 aa22.56■■□□□ 1.2
CNOT9-208ENST00000542068 P3H3Q8IVL6 736 aa22.48■■□□□ 1.19
CNOT9-208ENST00000542068 KANK4Q5T7N3 995 aaPredicted RBP22.41■■□□□ 1.18
CNOT9-208ENST00000542068 VPS8Q8N3P4 1428 aa22.36■■□□□ 1.17
CNOT9-208ENST00000542068 PEG3Q9GZU2 1588 aa22.31■■□□□ 1.16
CNOT9-208ENST00000542068 FAM50AQ14320 339 aaKnown RBP22.24■■□□□ 1.15
CNOT9-208ENST00000542068 KIF27Q86VH2 1401 aa22.24■■□□□ 1.15
CNOT9-208ENST00000542068 MYT1Q01538 1121 aa22.21■■□□□ 1.15
CNOT9-208ENST00000542068 DHX57Q6P158 1386 aaKnown RBP22.19■■□□□ 1.14
CNOT9-208ENST00000542068 KIF21BO75037 1637 aa22.19■■□□□ 1.14
CNOT9-208ENST00000542068 BCANQ96GW7 911 aa22.18■■□□□ 1.14
CNOT9-208ENST00000542068 KCNH8Q96L42 1107 aa22.18■■□□□ 1.14
CNOT9-208ENST00000542068 SUPT16HQ9Y5B9 1047 aaKnown RBP22.18■■□□□ 1.14
CNOT9-208ENST00000542068 CUX2O14529 1486 aa22.16■■□□□ 1.14
CNOT9-208ENST00000542068 NCAPD3P42695 1498 aa22.14■■□□□ 1.14
CNOT9-208ENST00000542068 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
CNOT9-208ENST00000542068 CUX1P39880 1505 aa22.12■■□□□ 1.13
CNOT9-208ENST00000542068 ARAP1Q96P48 1450 aa22.07■■□□□ 1.12
CNOT9-208ENST00000542068 HIRIP3Q9BW71 556 aaPredicted RBP22.06■■□□□ 1.12
CNOT9-208ENST00000542068 PRXQ9BXM0 1461 aa22.04■■□□□ 1.12
CNOT9-208ENST00000542068 ARID3CA6NKF2 412 aa22.03■■□□□ 1.12
CNOT9-208ENST00000542068 CARMIL1Q5VZK9 1371 aa22.02■■□□□ 1.12
CNOT9-208ENST00000542068 CADPSQ9ULU8 1353 aa22.01■■□□□ 1.11
CNOT9-208ENST00000542068 CFTRP13569 1480 aa22.01■■□□□ 1.11
CNOT9-208ENST00000542068 DDX10Q13206 875 aaKnown RBP22■■□□□ 1.11
CNOT9-208ENST00000542068 IGF1RP08069 1367 aa21.98■■□□□ 1.11
CNOT9-208ENST00000542068 SIN3AQ96ST3 1273 aa21.97■■□□□ 1.11
CNOT9-208ENST00000542068 CLSPNQ9HAW4 1339 aa21.95■■□□□ 1.1
CNOT9-208ENST00000542068 CCNB3Q8WWL7 1395 aa21.94■■□□□ 1.1
CNOT9-208ENST00000542068 HMGXB3Q12766 1538 aa21.93■■□□□ 1.1
CNOT9-208ENST00000542068 TSHZ2Q9NRE2 1034 aa21.93■■□□□ 1.1
CNOT9-208ENST00000542068 DNAJC5BQ9UF47 199 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms