Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 RPSAP31-201ENST00000416648 895 ntBASIC16.28■□□□□ 0.2
COL20A1Q9P218 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AC130709.1-201ENST00000484779 1212 ntBASIC16.28■□□□□ 0.2
COL20A1Q9P218 AC095040.1-201ENST00000513286 675 ntBASIC16.28■□□□□ 0.2
COL20A1Q9P218 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AC135983.4-201ENST00000564116 1262 ntBASIC16.28■□□□□ 0.2
COL20A1Q9P218 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AP003419.4-201ENST00000616071 517 ntBASIC16.28■□□□□ 0.2
COL20A1Q9P218 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AC011491.1-203ENST00000637688 543 ntBASIC16.28■□□□□ 0.2
COL20A1Q9P218 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 AC015656.1-201ENST00000624209 3578 ntBASIC16.27■□□□□ 0.2
COL20A1Q9P218 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 AC104784.1-201ENST00000473096 294 ntBASIC16.27■□□□□ 0.2
COL20A1Q9P218 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 AP002803.1-201ENST00000528836 498 ntBASIC16.27■□□□□ 0.2
COL20A1Q9P218 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 COX6A1P2-201ENST00000620597 330 ntBASIC16.27■□□□□ 0.2
COL20A1Q9P218 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 AP001184.1-201ENST00000637936 376 ntBASIC16.27■□□□□ 0.2
COL20A1Q9P218 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
COL20A1Q9P218 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL20A1Q9P218 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL20A1Q9P218 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL20A1Q9P218 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.27■□□□□ 0.19
COL20A1Q9P218 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
COL20A1Q9P218 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL20A1Q9P218 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.27■□□□□ 0.19
COL20A1Q9P218 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL20A1Q9P218 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL20A1Q9P218 HSPA8P5-201ENST00000456928 2069 ntBASIC16.26■□□□□ 0.19
COL20A1Q9P218 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 RPL17P11-201ENST00000417593 544 ntBASIC16.26■□□□□ 0.19
COL20A1Q9P218 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 CHCHD2P9-201ENST00000461726 456 ntBASIC16.26■□□□□ 0.19
COL20A1Q9P218 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL20A1Q9P218 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.26■□□□□ 0.19
COL20A1Q9P218 SKA2-205ENST00000580541 689 ntTSL 3 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms