RNA–Protein interactions for RNA: ENST00000341290.6

PERM1-201, Transcript of PPARGC1 and ESRR induced regulator, muscle 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PERM1, Length 3,035 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PERM1-201ENST00000341290 NISCHQ9Y2I1 1504 aa32.39■■■□□ 2.78
PERM1-201ENST00000341290 CCDC180Q9P1Z9 1646 aa28.83■■■□□ 2.21
PERM1-201ENST00000341290 ZCCHC6Q5VYS8 1495 aaKnown RBP27.18■■□□□ 1.94
PERM1-201ENST00000341290 DCAF1Q9Y4B6 1507 aa27.09■■□□□ 1.93
PERM1-201ENST00000341290 MYO15BQ96JP2 1530 aa27.03■■□□□ 1.92
PERM1-201ENST00000341290 ABCC9O60706 1549 aa27.02■■□□□ 1.92
PERM1-201ENST00000341290 NACADO15069 1562 aa26.8■■□□□ 1.88
PERM1-201ENST00000341290 SHROOM4Q9ULL8 1493 aa26.78■■□□□ 1.88
PERM1-201ENST00000341290 RB1CC1Q8TDY2 1594 aa26.61■■□□□ 1.85
PERM1-201ENST00000341290 SUPT5HO00267 1087 aaKnown RBP26.4■■□□□ 1.82
PERM1-201ENST00000341290 UNC13AQ9UPW8 1703 aa26.19■■□□□ 1.78
PERM1-201ENST00000341290 DCAF8L2P0C7V8 631 aa26■■□□□ 1.75
PERM1-201ENST00000341290 SCRIBQ14160 1630 aa25.93■■□□□ 1.74
PERM1-201ENST00000341290 BICRAQ9NZM4 1560 aa25.85■■□□□ 1.73
PERM1-201ENST00000341290 CHIC1Q5VXU3 224 aa25.55■■□□□ 1.68
PERM1-201ENST00000341290 PCGF6Q9BYE7 350 aa25.29■■□□□ 1.64
PERM1-201ENST00000341290 HRCP23327 699 aa25.25■■□□□ 1.63
PERM1-201ENST00000341290 PABPN1Q86U42 306 aaKnown RBP eCLIP25.15■■□□□ 1.62
PERM1-201ENST00000341290 BAZ1AQ9NRL2 1556 aaPredicted RBP25.08■■□□□ 1.6
PERM1-201ENST00000341290 SMARCA4P51532 1647 aa25.05■■□□□ 1.6
PERM1-201ENST00000341290 LOC105371045A0A1W2PR82 267 aa25.05■■□□□ 1.6
PERM1-201ENST00000341290 PPARGC1BQ86YN6 1023 aaKnown RBP25.01■■□□□ 1.59
PERM1-201ENST00000341290 EIF4G1Q04637 1599 aaKnown RBP25.01■■□□□ 1.59
PERM1-201ENST00000341290 CECR2Q9BXF3 1484 aa24.99■■□□□ 1.59
PERM1-201ENST00000341290 PEG3Q9GZU2 1588 aa24.99■■□□□ 1.59
PERM1-201ENST00000341290 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
PERM1-201ENST00000341290 RSF1Q96T23 1441 aaPredicted RBP24.79■■□□□ 1.56
PERM1-201ENST00000341290 SMARCA2P51531 1590 aa24.75■■□□□ 1.55
PERM1-201ENST00000341290 CC2D2AQ9P2K1 1620 aa24.73■■□□□ 1.55
PERM1-201ENST00000341290 HMGXB3Q12766 1538 aa24.69■■□□□ 1.54
PERM1-201ENST00000341290 WIZO95785 1651 aa24.67■■□□□ 1.54
PERM1-201ENST00000341290 ATAD2BQ9ULI0 1458 aa24.66■■□□□ 1.54
PERM1-201ENST00000341290 NCAPD3P42695 1498 aa24.64■■□□□ 1.54
PERM1-201ENST00000341290 TOP2AP11388 1531 aaKnown RBP24.55■■□□□ 1.52
PERM1-201ENST00000341290 EHMT2Q96KQ7 1210 aa24.5■■□□□ 1.51
PERM1-201ENST00000341290 FAM9AQ8IZU1 332 aaPredicted RBP24.48■■□□□ 1.51
PERM1-201ENST00000341290 TRIM26Q12899 539 aaPredicted RBP24.47■■□□□ 1.51
PERM1-201ENST00000341290 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
PERM1-201ENST00000341290 TRIM41Q8WV44 630 aa24.38■■□□□ 1.49
PERM1-201ENST00000341290 PELP1Q8IZL8 1130 aaKnown RBP24.26■■□□□ 1.47
PERM1-201ENST00000341290 DNAJC5BQ9UF47 199 aa24.21■■□□□ 1.47
PERM1-201ENST00000341290 PRDM2Q13029 1718 aa24.11■■□□□ 1.45
PERM1-201ENST00000341290 CCDC88BA6NC98 1476 aa24.1■■□□□ 1.45
PERM1-201ENST00000341290 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.42
PERM1-201ENST00000341290 ZEB1P37275 1124 aaPredicted RBP23.92■■□□□ 1.42
PERM1-201ENST00000341290 CFTRP13569 1480 aa23.91■■□□□ 1.42
PERM1-201ENST00000341290 CADPSQ9ULU8 1353 aa23.8■■□□□ 1.4
PERM1-201ENST00000341290 TTBK1Q5TCY1 1321 aaPredicted RBP23.73■■□□□ 1.39
PERM1-201ENST00000341290 SCAF1Q9H7N4 1312 aaKnown RBP23.72■■□□□ 1.39
PERM1-201ENST00000341290 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.7■■□□□ 1.38
PERM1-201ENST00000341290 NESP48681 1621 aa23.63■■□□□ 1.37
PERM1-201ENST00000341290 KIF21AQ7Z4S6 1674 aa23.62■■□□□ 1.37
PERM1-201ENST00000341290 CCER1Q8TC90 406 aaPredicted RBP23.58■■□□□ 1.37
PERM1-201ENST00000341290 PDS5BQ9NTI5 1447 aa23.56■■□□□ 1.36
PERM1-201ENST00000341290 FANCD2Q9BXW9 1451 aa23.53■■□□□ 1.36
PERM1-201ENST00000341290 BIVM-ERCC5R4GMW8 1640 aa23.5■■□□□ 1.35
PERM1-201ENST00000341290 THOC2Q8NI27 1593 aaKnown RBP23.47■■□□□ 1.35
PERM1-201ENST00000341290 CEP164Q9UPV0 1460 aa23.46■■□□□ 1.35
PERM1-201ENST00000341290 ABCC8Q09428 1581 aa23.41■■□□□ 1.34
PERM1-201ENST00000341290 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
PERM1-201ENST00000341290 DNMBPQ6XZF7 1577 aa23.41■■□□□ 1.34
PERM1-201ENST00000341290 WDR62O43379 1518 aa23.4■■□□□ 1.34
PERM1-201ENST00000341290 MRC2Q9UBG0 1479 aa23.36■■□□□ 1.33
PERM1-201ENST00000341290 CUX1P39880 1505 aa23.35■■□□□ 1.33
PERM1-201ENST00000341290 MYT1Q01538 1121 aa23.34■■□□□ 1.33
PERM1-201ENST00000341290 SYNJ1O43426 1573 aa23.33■■□□□ 1.32
PERM1-201ENST00000341290 URB2Q14146 1524 aaKnown RBP23.32■■□□□ 1.32
PERM1-201ENST00000341290 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
PERM1-201ENST00000341290 TOPBP1Q92547 1522 aa23.28■■□□□ 1.32
PERM1-201ENST00000341290 SOGA1O94964 1423 aa23.28■■□□□ 1.32
PERM1-201ENST00000341290 UBTFP17480 764 aaKnown RBP23.26■■□□□ 1.31
PERM1-201ENST00000341290 ERCC6Q03468 1493 aa23.23■■□□□ 1.31
PERM1-201ENST00000341290 WDR97A6NE52 1622 aa23.23■■□□□ 1.31
PERM1-201ENST00000341290 NEUROD1Q13562 356 aa23.22■■□□□ 1.31
PERM1-201ENST00000341290 CEP162Q5TB80 1403 aa23.22■■□□□ 1.31
PERM1-201ENST00000341290 DIEXFQ68CQ4 756 aaKnown RBP23.22■■□□□ 1.31
PERM1-201ENST00000341290 RUSC2Q8N2Y8 1516 aa23.17■■□□□ 1.3
PERM1-201ENST00000341290 ACIN1Q9UKV3 1341 aaKnown RBP23.15■■□□□ 1.3
PERM1-201ENST00000341290 TARBP1Q13395 1621 aaKnown RBP23.14■■□□□ 1.29
PERM1-201ENST00000341290 CSRNP3Q8WYN3 585 aa23.13■■□□□ 1.29
PERM1-201ENST00000341290 CUX2O14529 1486 aa23.11■■□□□ 1.29
PERM1-201ENST00000341290 POLA1P09884 1462 aaPredicted RBP23.09■■□□□ 1.29
PERM1-201ENST00000341290 FGD5Q6ZNL6 1462 aa23.09■■□□□ 1.29
PERM1-201ENST00000341290 TNIKQ9UKE5 1360 aa23.05■■□□□ 1.28
PERM1-201ENST00000341290 EEA1Q15075 1411 aa23.04■■□□□ 1.28
PERM1-201ENST00000341290 RANGAP1P46060 587 aaPredicted RBP23.04■■□□□ 1.28
PERM1-201ENST00000341290 ABCA10Q8WWZ4 1543 aa23.04■■□□□ 1.28
PERM1-201ENST00000341290 GTF3C3Q9Y5Q9 886 aa23.03■■□□□ 1.28
PERM1-201ENST00000341290 IFT140Q96RY7 1462 aa23.02■■□□□ 1.27
PERM1-201ENST00000341290 HNRNPUL2Q1KMD3 747 aaKnown RBP23.01■■□□□ 1.27
PERM1-201ENST00000341290 ABCA5Q8WWZ7 1642 aa22.99■■□□□ 1.27
PERM1-201ENST00000341290 YTHDC1Q96MU7 727 aaKnown RBP22.95■■□□□ 1.26
PERM1-201ENST00000341290 CENPBP07199 599 aaPredicted RBP22.94■■□□□ 1.26
PERM1-201ENST00000341290 ZNF316A6NFI3 1004 aaPredicted RBP22.88■■□□□ 1.25
PERM1-201ENST00000341290 PBRM1Q86U86 1689 aa22.87■■□□□ 1.25
PERM1-201ENST00000341290 GOLGA3Q08378 1498 aa22.87■■□□□ 1.25
PERM1-201ENST00000341290 RAD54L2Q9Y4B4 1467 aa22.85■■□□□ 1.25
PERM1-201ENST00000341290 EIF4G3O43432 1585 aaKnown RBP22.83■■□□□ 1.25
PERM1-201ENST00000341290 ERICH3Q5RHP9 1530 aa22.81■■□□□ 1.24
PERM1-201ENST00000341290 CUL7Q14999 1698 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms