Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 CICP14-201ENST00000629111 2732 ntBASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.34
CLCF1Q9UBD9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 TSPY25P-201ENST00000429463 745 ntBASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC134698.3-201ENST00000523880 214 ntBASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC242376.1-201ENST00000559033 726 ntBASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC124068.2-201ENST00000569473 1109 ntBASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 MYADML-201ENST00000474610 2147 ntBASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 LINC01165-201ENST00000445190 1623 ntBASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLCF1Q9UBD9 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 MTHFR-210ENST00000641407 2387 ntBASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 HLA-DQB2-229ENST00000411527 1059 ntBASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 PARVG-202ENST00000415224 999 ntTSL 2 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 MEG3_2.1-201ENST00000611456 105 ntBASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
CLCF1Q9UBD9 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms