Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 AC012362.1-201ENST00000434906 739 ntBASIC16.2■□□□□ 0.18
VTA1Q9NP79 ERP29P1-201ENST00000442902 706 ntBASIC16.2■□□□□ 0.18
VTA1Q9NP79 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 SIGLEC22P-201ENST00000599104 714 ntBASIC16.2■□□□□ 0.18
VTA1Q9NP79 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 AP000322.3-201ENST00000608665 388 ntBASIC16.2■□□□□ 0.18
VTA1Q9NP79 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 AC132872.4-202ENST00000622924 2756 ntBASIC16.2■□□□□ 0.18
VTA1Q9NP79 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VTA1Q9NP79 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VTA1Q9NP79 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 AC090502.4-201ENST00000551714 1386 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 AL627389.1-201ENST00000413508 1182 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 HERC2P11-201ENST00000562845 725 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 AC100756.2-201ENST00000569537 736 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 MIR2392-201ENST00000584881 84 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 AC009145.4-201ENST00000625119 1294 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 TCAF2P1-201ENST00000291129 2421 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VTA1Q9NP79 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VTA1Q9NP79 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.19■□□□□ 0.18
VTA1Q9NP79 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTA1Q9NP79 AGGF1P1-201ENST00000509500 2073 ntBASIC16.18■□□□□ 0.18
VTA1Q9NP79 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VTA1Q9NP79 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms