Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 AL359845.1-201ENST00000458202 1648 ntBASIC13.82□□□□□ -0.2
NR1H4Q96RI1 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 IGHV3-22-201ENST00000520721 359 ntBASIC13.82□□□□□ -0.2
NR1H4Q96RI1 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 AC018845.2-201ENST00000568326 409 ntBASIC13.82□□□□□ -0.2
NR1H4Q96RI1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 AC073389.1-201ENST00000595595 795 ntBASIC13.82□□□□□ -0.2
NR1H4Q96RI1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 AC025181.2-201ENST00000606994 802 ntBASIC13.82□□□□□ -0.2
NR1H4Q96RI1 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 VRK3-209ENST00000594948 1847 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
NR1H4Q96RI1 AC025580.3-201ENST00000617932 1424 ntBASIC13.81□□□□□ -0.2
NR1H4Q96RI1 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 LPO-204ENST00000543544 2350 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 AC009078.2-202ENST00000463353 338 ntBASIC13.81□□□□□ -0.2
NR1H4Q96RI1 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 AC079776.4-201ENST00000511039 504 ntBASIC13.81□□□□□ -0.2
NR1H4Q96RI1 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 AL662844.1-201ENST00000546340 181 ntBASIC13.81□□□□□ -0.2
NR1H4Q96RI1 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 Z83851.2-201ENST00000609564 659 ntBASIC13.81□□□□□ -0.2
NR1H4Q96RI1 AC004877.2-201ENST00000623941 599 ntBASIC13.81□□□□□ -0.2
NR1H4Q96RI1 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NR1H4Q96RI1 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms