RNA–Protein interactions for RNA: ENST00000524419.5

LDLRAD3-202, Transcript of low density lipoprotein receptor class A domain containing 3, humanhuman

TSL 5 BASIC

Gene LDLRAD3, Length 1,996 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD3-202ENST00000524419 NISCHQ9Y2I1 1504 aa29.84■■■□□ 2.37
LDLRAD3-202ENST00000524419 CCDC180Q9P1Z9 1646 aa25.8■■□□□ 1.72
LDLRAD3-202ENST00000524419 ZCCHC6Q5VYS8 1495 aaKnown RBP25.18■■□□□ 1.62
LDLRAD3-202ENST00000524419 SHROOM4Q9ULL8 1493 aa24.81■■□□□ 1.56
LDLRAD3-202ENST00000524419 DCAF1Q9Y4B6 1507 aa24.64■■□□□ 1.53
LDLRAD3-202ENST00000524419 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
LDLRAD3-202ENST00000524419 ABCC9O60706 1549 aa24.25■■□□□ 1.47
LDLRAD3-202ENST00000524419 MYO15BQ96JP2 1530 aa24.13■■□□□ 1.45
LDLRAD3-202ENST00000524419 SUPT5HO00267 1087 aaKnown RBP24.11■■□□□ 1.45
LDLRAD3-202ENST00000524419 NACADO15069 1562 aa23.87■■□□□ 1.41
LDLRAD3-202ENST00000524419 SCRIBQ14160 1630 aa23.86■■□□□ 1.41
LDLRAD3-202ENST00000524419 RB1CC1Q8TDY2 1594 aa23.57■■□□□ 1.36
LDLRAD3-202ENST00000524419 RSF1Q96T23 1441 aaPredicted RBP23.35■■□□□ 1.33
LDLRAD3-202ENST00000524419 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
LDLRAD3-202ENST00000524419 UNC13AQ9UPW8 1703 aa23.19■■□□□ 1.3
LDLRAD3-202ENST00000524419 CECR2Q9BXF3 1484 aa23.16■■□□□ 1.3
LDLRAD3-202ENST00000524419 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
LDLRAD3-202ENST00000524419 BAZ1AQ9NRL2 1556 aaPredicted RBP23.02■■□□□ 1.27
LDLRAD3-202ENST00000524419 WIZO95785 1651 aa22.98■■□□□ 1.27
LDLRAD3-202ENST00000524419 SMARCA4P51532 1647 aa22.86■■□□□ 1.25
LDLRAD3-202ENST00000524419 BICRAQ9NZM4 1560 aa22.84■■□□□ 1.25
LDLRAD3-202ENST00000524419 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
LDLRAD3-202ENST00000524419 TOP2AP11388 1531 aaKnown RBP22.72■■□□□ 1.23
LDLRAD3-202ENST00000524419 PABPN1Q86U42 306 aaKnown RBP eCLIP22.67■■□□□ 1.22
LDLRAD3-202ENST00000524419 TRIM41Q8WV44 630 aa22.59■■□□□ 1.21
LDLRAD3-202ENST00000524419 EIF4G1Q04637 1599 aaKnown RBP22.58■■□□□ 1.2
LDLRAD3-202ENST00000524419 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
LDLRAD3-202ENST00000524419 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
LDLRAD3-202ENST00000524419 CCDC88BA6NC98 1476 aa22.48■■□□□ 1.19
LDLRAD3-202ENST00000524419 LOC105371045A0A1W2PR82 267 aa22.47■■□□□ 1.19
LDLRAD3-202ENST00000524419 ATAD2BQ9ULI0 1458 aa22.31■■□□□ 1.16
LDLRAD3-202ENST00000524419 BAZ1BQ9UIG0 1483 aaKnown RBP22.25■■□□□ 1.15
LDLRAD3-202ENST00000524419 FAM9AQ8IZU1 332 aaPredicted RBP22.25■■□□□ 1.15
LDLRAD3-202ENST00000524419 ABCC8Q09428 1581 aa22.24■■□□□ 1.15
LDLRAD3-202ENST00000524419 HRCP23327 699 aa22.08■■□□□ 1.12
LDLRAD3-202ENST00000524419 HMGXB3Q12766 1538 aa22.06■■□□□ 1.12
LDLRAD3-202ENST00000524419 PCGF6Q9BYE7 350 aa22.03■■□□□ 1.12
LDLRAD3-202ENST00000524419 NCAPD3P42695 1498 aa21.99■■□□□ 1.11
LDLRAD3-202ENST00000524419 WRNQ14191 1432 aaPredicted RBP eCLIP21.98■■□□□ 1.11
LDLRAD3-202ENST00000524419 EHMT2Q96KQ7 1210 aa21.96■■□□□ 1.11
LDLRAD3-202ENST00000524419 EEA1Q15075 1411 aa21.94■■□□□ 1.1
LDLRAD3-202ENST00000524419 SYNJ1O43426 1573 aa21.91■■□□□ 1.1
LDLRAD3-202ENST00000524419 CC2D2AQ9P2K1 1620 aa21.91■■□□□ 1.1
LDLRAD3-202ENST00000524419 SOGA1O94964 1423 aa21.89■■□□□ 1.1
LDLRAD3-202ENST00000524419 TRIM26Q12899 539 aaPredicted RBP21.87■■□□□ 1.09
LDLRAD3-202ENST00000524419 RUSC2Q8N2Y8 1516 aa21.78■■□□□ 1.08
LDLRAD3-202ENST00000524419 TOP2BQ02880 1626 aa21.76■■□□□ 1.07
LDLRAD3-202ENST00000524419 CSRNP3Q8WYN3 585 aa21.76■■□□□ 1.07
LDLRAD3-202ENST00000524419 BIVM-ERCC5R4GMW8 1640 aa21.75■■□□□ 1.07
LDLRAD3-202ENST00000524419 PRDM2Q13029 1718 aa21.72■■□□□ 1.07
LDLRAD3-202ENST00000524419 GOLGA3Q08378 1498 aa21.7■■□□□ 1.06
LDLRAD3-202ENST00000524419 TNIKQ9UKE5 1360 aa21.69■■□□□ 1.06
LDLRAD3-202ENST00000524419 KIF21BO75037 1637 aa21.67■■□□□ 1.06
LDLRAD3-202ENST00000524419 CFTRP13569 1480 aa21.67■■□□□ 1.06
LDLRAD3-202ENST00000524419 CEP162Q5TB80 1403 aa21.66■■□□□ 1.06
LDLRAD3-202ENST00000524419 CEP164Q9UPV0 1460 aa21.64■■□□□ 1.05
LDLRAD3-202ENST00000524419 CUX1P39880 1505 aa21.57■■□□□ 1.04
LDLRAD3-202ENST00000524419 UBTFP17480 764 aaKnown RBP21.57■■□□□ 1.04
LDLRAD3-202ENST00000524419 CADPSQ9ULU8 1353 aa21.48■■□□□ 1.03
LDLRAD3-202ENST00000524419 PPARGC1BQ86YN6 1023 aaKnown RBP21.45■■□□□ 1.02
LDLRAD3-202ENST00000524419 RAPGEF2Q9Y4G8 1499 aa21.43■■□□□ 1.02
LDLRAD3-202ENST00000524419 ERICH3Q5RHP9 1530 aa21.41■■□□□ 1.02
LDLRAD3-202ENST00000524419 KIF27Q86VH2 1401 aa21.38■■□□□ 1.01
LDLRAD3-202ENST00000524419 CLIP1P30622 1438 aa21.37■■□□□ 1.01
LDLRAD3-202ENST00000524419 PRXQ9BXM0 1461 aa21.35■■□□□ 1.01
LDLRAD3-202ENST00000524419 ZEB1P37275 1124 aaPredicted RBP21.35■■□□□ 1.01
LDLRAD3-202ENST00000524419 FANCD2Q9BXW9 1451 aa21.29■■□□□ 1
LDLRAD3-202ENST00000524419 FGD5Q6ZNL6 1462 aa21.25■□□□□ 0.99
LDLRAD3-202ENST00000524419 VPS8Q8N3P4 1428 aa21.24■□□□□ 0.99
LDLRAD3-202ENST00000524419 DNMBPQ6XZF7 1577 aa21.22■□□□□ 0.99
LDLRAD3-202ENST00000524419 CUX2O14529 1486 aa21.22■□□□□ 0.99
LDLRAD3-202ENST00000524419 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
LDLRAD3-202ENST00000524419 NESP48681 1621 aa21.18■□□□□ 0.98
LDLRAD3-202ENST00000524419 TTBK1Q5TCY1 1321 aaPredicted RBP21.17■□□□□ 0.98
LDLRAD3-202ENST00000524419 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
LDLRAD3-202ENST00000524419 RANGAP1P46060 587 aaPredicted RBP21.1■□□□□ 0.97
LDLRAD3-202ENST00000524419 ARAP1Q96P48 1450 aa21.1■□□□□ 0.97
LDLRAD3-202ENST00000524419 IGF1RP08069 1367 aa21.1■□□□□ 0.97
LDLRAD3-202ENST00000524419 APLP2Q06481 763 aa21.06■□□□□ 0.96
LDLRAD3-202ENST00000524419 ABCA10Q8WWZ4 1543 aa21.06■□□□□ 0.96
LDLRAD3-202ENST00000524419 POLA1P09884 1462 aaPredicted RBP21.05■□□□□ 0.96
LDLRAD3-202ENST00000524419 DNAJC5Q9H3Z4 198 aa21.05■□□□□ 0.96
LDLRAD3-202ENST00000524419 CARMIL1Q5VZK9 1371 aa21.02■□□□□ 0.96
LDLRAD3-202ENST00000524419 ERCC6Q03468 1493 aa21.02■□□□□ 0.95
LDLRAD3-202ENST00000524419 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
LDLRAD3-202ENST00000524419 PDS5BQ9NTI5 1447 aa21.01■□□□□ 0.95
LDLRAD3-202ENST00000524419 URB2Q14146 1524 aaKnown RBP21■□□□□ 0.95
LDLRAD3-202ENST00000524419 WDR97A6NE52 1622 aa20.99■□□□□ 0.95
LDLRAD3-202ENST00000524419 KIF21AQ7Z4S6 1674 aa20.98■□□□□ 0.95
LDLRAD3-202ENST00000524419 ARHGAP35Q9NRY4 1499 aa20.97■□□□□ 0.95
LDLRAD3-202ENST00000524419 CUL7Q14999 1698 aa20.96■□□□□ 0.95
LDLRAD3-202ENST00000524419 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.96■□□□□ 0.95
LDLRAD3-202ENST00000524419 CCER1Q8TC90 406 aaPredicted RBP20.96■□□□□ 0.95
LDLRAD3-202ENST00000524419 ABCA5Q8WWZ7 1642 aa20.87■□□□□ 0.93
LDLRAD3-202ENST00000524419 CTTNBP2Q8WZ74 1663 aa20.85■□□□□ 0.93
LDLRAD3-202ENST00000524419 GAPVD1Q14C86 1478 aa20.78■□□□□ 0.92
LDLRAD3-202ENST00000524419 EFCAB5A4FU69 1503 aa20.77■□□□□ 0.92
LDLRAD3-202ENST00000524419 TARBP1Q13395 1621 aaKnown RBP20.77■□□□□ 0.92
LDLRAD3-202ENST00000524419 HNRNPUL2Q1KMD3 747 aaKnown RBP20.76■□□□□ 0.91
LDLRAD3-202ENST00000524419 MAP3K1Q13233 1512 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms