RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 NISCHQ9Y2I1 1504 aa31.4■■■□□ 2.62
LDB3-207ENST00000542786 CCDC180Q9P1Z9 1646 aa27.15■■□□□ 1.94
LDB3-207ENST00000542786 ZCCHC6Q5VYS8 1495 aaKnown RBP26.49■■□□□ 1.83
LDB3-207ENST00000542786 DCAF1Q9Y4B6 1507 aa25.97■■□□□ 1.75
LDB3-207ENST00000542786 SHROOM4Q9ULL8 1493 aa25.86■■□□□ 1.73
LDB3-207ENST00000542786 DCAF8L2P0C7V8 631 aa25.61■■□□□ 1.69
LDB3-207ENST00000542786 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
LDB3-207ENST00000542786 ABCC9O60706 1549 aa25.29■■□□□ 1.64
LDB3-207ENST00000542786 NACADO15069 1562 aa25.17■■□□□ 1.62
LDB3-207ENST00000542786 SCRIBQ14160 1630 aa25.03■■□□□ 1.6
LDB3-207ENST00000542786 SUPT5HO00267 1087 aaKnown RBP25.03■■□□□ 1.6
LDB3-207ENST00000542786 RB1CC1Q8TDY2 1594 aa24.83■■□□□ 1.56
LDB3-207ENST00000542786 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
LDB3-207ENST00000542786 UNC13AQ9UPW8 1703 aa24.43■■□□□ 1.5
LDB3-207ENST00000542786 CECR2Q9BXF3 1484 aa24.41■■□□□ 1.5
LDB3-207ENST00000542786 MROH2BQ7Z745 1585 aa24.3■■□□□ 1.48
LDB3-207ENST00000542786 CHIC1Q5VXU3 224 aa24.27■■□□□ 1.48
LDB3-207ENST00000542786 BICRAQ9NZM4 1560 aa24.21■■□□□ 1.47
LDB3-207ENST00000542786 BAZ1AQ9NRL2 1556 aaPredicted RBP24.16■■□□□ 1.46
LDB3-207ENST00000542786 WIZO95785 1651 aa24.11■■□□□ 1.45
LDB3-207ENST00000542786 SMARCA4P51532 1647 aa24.05■■□□□ 1.44
LDB3-207ENST00000542786 PABPN1Q86U42 306 aaKnown RBP eCLIP23.92■■□□□ 1.42
LDB3-207ENST00000542786 TOP2AP11388 1531 aaKnown RBP23.86■■□□□ 1.41
LDB3-207ENST00000542786 PEG3Q9GZU2 1588 aa23.76■■□□□ 1.39
LDB3-207ENST00000542786 EIF4G1Q04637 1599 aaKnown RBP23.74■■□□□ 1.39
LDB3-207ENST00000542786 SMARCA2P51531 1590 aa23.68■■□□□ 1.38
LDB3-207ENST00000542786 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
LDB3-207ENST00000542786 ATAD2BQ9ULI0 1458 aa23.55■■□□□ 1.36
LDB3-207ENST00000542786 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
LDB3-207ENST00000542786 BAZ1BQ9UIG0 1483 aaKnown RBP23.38■■□□□ 1.33
LDB3-207ENST00000542786 LOC105371045A0A1W2PR82 267 aa23.34■■□□□ 1.33
LDB3-207ENST00000542786 ABCC8Q09428 1581 aa23.27■■□□□ 1.32
LDB3-207ENST00000542786 NCAPD3P42695 1498 aa23.27■■□□□ 1.31
LDB3-207ENST00000542786 HMGXB3Q12766 1538 aa23.26■■□□□ 1.31
LDB3-207ENST00000542786 FAM9AQ8IZU1 332 aaPredicted RBP23.09■■□□□ 1.29
LDB3-207ENST00000542786 WRNQ14191 1432 aaPredicted RBP eCLIP23.02■■□□□ 1.28
LDB3-207ENST00000542786 SYNJ1O43426 1573 aa22.98■■□□□ 1.27
LDB3-207ENST00000542786 SOGA1O94964 1423 aa22.92■■□□□ 1.26
LDB3-207ENST00000542786 CC2D2AQ9P2K1 1620 aa22.91■■□□□ 1.26
LDB3-207ENST00000542786 EEA1Q15075 1411 aa22.89■■□□□ 1.25
LDB3-207ENST00000542786 CFTRP13569 1480 aa22.87■■□□□ 1.25
LDB3-207ENST00000542786 RUSC2Q8N2Y8 1516 aa22.84■■□□□ 1.25
LDB3-207ENST00000542786 TOP2BQ02880 1626 aa22.82■■□□□ 1.24
LDB3-207ENST00000542786 BIVM-ERCC5R4GMW8 1640 aa22.8■■□□□ 1.24
LDB3-207ENST00000542786 PRDM2Q13029 1718 aa22.74■■□□□ 1.23
LDB3-207ENST00000542786 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
LDB3-207ENST00000542786 CSRNP3Q8WYN3 585 aa22.71■■□□□ 1.23
LDB3-207ENST00000542786 CUX1P39880 1505 aa22.7■■□□□ 1.22
LDB3-207ENST00000542786 CADPSQ9ULU8 1353 aa22.67■■□□□ 1.22
LDB3-207ENST00000542786 PCGF6Q9BYE7 350 aa22.65■■□□□ 1.22
LDB3-207ENST00000542786 TNIKQ9UKE5 1360 aa22.64■■□□□ 1.21
LDB3-207ENST00000542786 KIF21BO75037 1637 aa22.63■■□□□ 1.21
LDB3-207ENST00000542786 GOLGA3Q08378 1498 aa22.61■■□□□ 1.21
LDB3-207ENST00000542786 CEP164Q9UPV0 1460 aa22.57■■□□□ 1.2
LDB3-207ENST00000542786 CEP162Q5TB80 1403 aa22.55■■□□□ 1.2
LDB3-207ENST00000542786 TRIM26Q12899 539 aaPredicted RBP22.54■■□□□ 1.2
LDB3-207ENST00000542786 RAPGEF2Q9Y4G8 1499 aa22.44■■□□□ 1.18
LDB3-207ENST00000542786 FANCD2Q9BXW9 1451 aa22.42■■□□□ 1.18
LDB3-207ENST00000542786 PRXQ9BXM0 1461 aa22.42■■□□□ 1.18
LDB3-207ENST00000542786 HRCP23327 699 aa22.41■■□□□ 1.18
LDB3-207ENST00000542786 UBTFP17480 764 aaKnown RBP22.39■■□□□ 1.18
LDB3-207ENST00000542786 ERICH3Q5RHP9 1530 aa22.39■■□□□ 1.17
LDB3-207ENST00000542786 NESP48681 1621 aa22.39■■□□□ 1.17
LDB3-207ENST00000542786 KIF27Q86VH2 1401 aa22.38■■□□□ 1.17
LDB3-207ENST00000542786 LAMC3Q9Y6N6 1575 aa22.36■■□□□ 1.17
LDB3-207ENST00000542786 FGD5Q6ZNL6 1462 aa22.34■■□□□ 1.17
LDB3-207ENST00000542786 DNMBPQ6XZF7 1577 aa22.31■■□□□ 1.16
LDB3-207ENST00000542786 DNAJC5BQ9UF47 199 aa22.3■■□□□ 1.16
LDB3-207ENST00000542786 CLIP1P30622 1438 aa22.26■■□□□ 1.15
LDB3-207ENST00000542786 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
LDB3-207ENST00000542786 CUX2O14529 1486 aa22.25■■□□□ 1.15
LDB3-207ENST00000542786 IGF1RP08069 1367 aa22.2■■□□□ 1.14
LDB3-207ENST00000542786 POLA1P09884 1462 aaPredicted RBP22.18■■□□□ 1.14
LDB3-207ENST00000542786 URB2Q14146 1524 aaKnown RBP22.18■■□□□ 1.14
LDB3-207ENST00000542786 PPARGC1BQ86YN6 1023 aaKnown RBP22.17■■□□□ 1.14
LDB3-207ENST00000542786 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
LDB3-207ENST00000542786 VPS8Q8N3P4 1428 aa22.15■■□□□ 1.14
LDB3-207ENST00000542786 PDS5BQ9NTI5 1447 aa22.13■■□□□ 1.13
LDB3-207ENST00000542786 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
LDB3-207ENST00000542786 WDR97A6NE52 1622 aa22.09■■□□□ 1.13
LDB3-207ENST00000542786 KIF21AQ7Z4S6 1674 aa22.09■■□□□ 1.13
LDB3-207ENST00000542786 ARAP1Q96P48 1450 aa22.07■■□□□ 1.12
LDB3-207ENST00000542786 CARMIL1Q5VZK9 1371 aa22.04■■□□□ 1.12
LDB3-207ENST00000542786 ARHGAP35Q9NRY4 1499 aa21.97■■□□□ 1.11
LDB3-207ENST00000542786 ABCA5Q8WWZ7 1642 aa21.97■■□□□ 1.11
LDB3-207ENST00000542786 CUL7Q14999 1698 aa21.95■■□□□ 1.1
LDB3-207ENST00000542786 TARBP1Q13395 1621 aaKnown RBP21.92■■□□□ 1.1
LDB3-207ENST00000542786 RANGAP1P46060 587 aaPredicted RBP21.9■■□□□ 1.1
LDB3-207ENST00000542786 MRC2Q9UBG0 1479 aa21.88■■□□□ 1.09
LDB3-207ENST00000542786 TTBK1Q5TCY1 1321 aaPredicted RBP21.87■■□□□ 1.09
LDB3-207ENST00000542786 GAPVD1Q14C86 1478 aa21.84■■□□□ 1.09
LDB3-207ENST00000542786 TDRD9Q8NDG6 1382 aaKnown RBP21.83■■□□□ 1.09
LDB3-207ENST00000542786 ZEB1P37275 1124 aaPredicted RBP21.8■■□□□ 1.08
LDB3-207ENST00000542786 WDR62O43379 1518 aa21.79■■□□□ 1.08
LDB3-207ENST00000542786 CTTNBP2Q8WZ74 1663 aa21.77■■□□□ 1.07
LDB3-207ENST00000542786 APLP2Q06481 763 aa21.74■■□□□ 1.07
LDB3-207ENST00000542786 EFCAB5A4FU69 1503 aa21.72■■□□□ 1.07
LDB3-207ENST00000542786 PBRM1Q86U86 1689 aa21.7■■□□□ 1.06
LDB3-207ENST00000542786 MAP3K1Q13233 1512 aa21.7■■□□□ 1.06
LDB3-207ENST00000542786 KANK4Q5T7N3 995 aaPredicted RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms