RNA–Protein interactions for RNA: ENST00000582730.6

SRSF1-205, Transcript of serine and arginine rich splicing factor 1, humanhuman

TSL 2 BASIC

Gene SRSF1, Length 3,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-205ENST00000582730 NISCHQ9Y2I1 1504 aa28.98■■■□□ 2.23
SRSF1-205ENST00000582730 CCDC180Q9P1Z9 1646 aa24.76■■□□□ 1.55
SRSF1-205ENST00000582730 SHROOM4Q9ULL8 1493 aa24.63■■□□□ 1.53
SRSF1-205ENST00000582730 ZCCHC6Q5VYS8 1495 aaKnown RBP24.44■■□□□ 1.5
SRSF1-205ENST00000582730 DCAF8L2P0C7V8 631 aa24.36■■□□□ 1.49
SRSF1-205ENST00000582730 SUPT5HO00267 1087 aaKnown RBP24.02■■□□□ 1.44
SRSF1-205ENST00000582730 DCAF1Q9Y4B6 1507 aa23.72■■□□□ 1.39
SRSF1-205ENST00000582730 ABCC9O60706 1549 aa23.35■■□□□ 1.33
SRSF1-205ENST00000582730 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
SRSF1-205ENST00000582730 MYO15BQ96JP2 1530 aa23.14■■□□□ 1.3
SRSF1-205ENST00000582730 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.29
SRSF1-205ENST00000582730 NACADO15069 1562 aa23■■□□□ 1.27
SRSF1-205ENST00000582730 RSF1Q96T23 1441 aaPredicted RBP22.82■■□□□ 1.24
SRSF1-205ENST00000582730 RB1CC1Q8TDY2 1594 aa22.73■■□□□ 1.23
SRSF1-205ENST00000582730 CECR2Q9BXF3 1484 aa22.66■■□□□ 1.22
SRSF1-205ENST00000582730 MROH2BQ7Z745 1585 aa22.53■■□□□ 1.2
SRSF1-205ENST00000582730 LOC105371045A0A1W2PR82 267 aa22.43■■□□□ 1.18
SRSF1-205ENST00000582730 WIZO95785 1651 aa22.4■■□□□ 1.18
SRSF1-205ENST00000582730 TRIM41Q8WV44 630 aa22.37■■□□□ 1.17
SRSF1-205ENST00000582730 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
SRSF1-205ENST00000582730 UNC13AQ9UPW8 1703 aa22.3■■□□□ 1.16
SRSF1-205ENST00000582730 PABPN1Q86U42 306 aaKnown RBP eCLIP22.29■■□□□ 1.16
SRSF1-205ENST00000582730 FAM9AQ8IZU1 332 aaPredicted RBP22.24■■□□□ 1.15
SRSF1-205ENST00000582730 SMARCA4P51532 1647 aa22.15■■□□□ 1.14
SRSF1-205ENST00000582730 PCGF6Q9BYE7 350 aa22.12■■□□□ 1.13
SRSF1-205ENST00000582730 EHMT2Q96KQ7 1210 aa22.11■■□□□ 1.13
SRSF1-205ENST00000582730 HRCP23327 699 aa22.09■■□□□ 1.13
SRSF1-205ENST00000582730 BICRAQ9NZM4 1560 aa22.05■■□□□ 1.12
SRSF1-205ENST00000582730 TOP2AP11388 1531 aaKnown RBP22.03■■□□□ 1.12
SRSF1-205ENST00000582730 CCDC88BA6NC98 1476 aa21.95■■□□□ 1.1
SRSF1-205ENST00000582730 SMARCA2P51531 1590 aa21.89■■□□□ 1.1
SRSF1-205ENST00000582730 EIF4G1Q04637 1599 aaKnown RBP21.86■■□□□ 1.09
SRSF1-205ENST00000582730 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
SRSF1-205ENST00000582730 TRIM26Q12899 539 aaPredicted RBP21.73■■□□□ 1.07
SRSF1-205ENST00000582730 PEG3Q9GZU2 1588 aa21.67■■□□□ 1.06
SRSF1-205ENST00000582730 ATAD2BQ9ULI0 1458 aa21.67■■□□□ 1.06
SRSF1-205ENST00000582730 BAZ1BQ9UIG0 1483 aaKnown RBP21.65■■□□□ 1.06
SRSF1-205ENST00000582730 PPARGC1BQ86YN6 1023 aaKnown RBP21.63■■□□□ 1.05
SRSF1-205ENST00000582730 SOGA1O94964 1423 aa21.54■■□□□ 1.04
SRSF1-205ENST00000582730 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
SRSF1-205ENST00000582730 RUSC2Q8N2Y8 1516 aa21.44■■□□□ 1.02
SRSF1-205ENST00000582730 CSRNP3Q8WYN3 585 aa21.42■■□□□ 1.02
SRSF1-205ENST00000582730 UBTFP17480 764 aaKnown RBP21.4■■□□□ 1.02
SRSF1-205ENST00000582730 EEA1Q15075 1411 aa21.36■■□□□ 1.01
SRSF1-205ENST00000582730 SYNJ1O43426 1573 aa21.36■■□□□ 1.01
SRSF1-205ENST00000582730 TTBK1Q5TCY1 1321 aaPredicted RBP21.31■■□□□ 1
SRSF1-205ENST00000582730 CEP162Q5TB80 1403 aa21.3■■□□□ 1
SRSF1-205ENST00000582730 NCAPD3P42695 1498 aa21.28■■□□□ 1
SRSF1-205ENST00000582730 TNIKQ9UKE5 1360 aa21.26■□□□□ 0.99
SRSF1-205ENST00000582730 HMGXB3Q12766 1538 aa21.24■□□□□ 0.99
SRSF1-205ENST00000582730 GOLGA3Q08378 1498 aa21.23■□□□□ 0.99
SRSF1-205ENST00000582730 CEP164Q9UPV0 1460 aa21.14■□□□□ 0.97
SRSF1-205ENST00000582730 RANGAP1P46060 587 aaPredicted RBP21.13■□□□□ 0.97
SRSF1-205ENST00000582730 TOP2BQ02880 1626 aa21.11■□□□□ 0.97
SRSF1-205ENST00000582730 ZEB1P37275 1124 aaPredicted RBP21.1■□□□□ 0.97
SRSF1-205ENST00000582730 KIF21BO75037 1637 aa21.05■□□□□ 0.96
SRSF1-205ENST00000582730 RAPGEF2Q9Y4G8 1499 aa21.03■□□□□ 0.96
SRSF1-205ENST00000582730 CFTRP13569 1480 aa21.03■□□□□ 0.96
SRSF1-205ENST00000582730 BIVM-ERCC5R4GMW8 1640 aa21.01■□□□□ 0.95
SRSF1-205ENST00000582730 CLIP1P30622 1438 aa21■□□□□ 0.95
SRSF1-205ENST00000582730 CUX1P39880 1505 aa20.99■□□□□ 0.95
SRSF1-205ENST00000582730 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.98■□□□□ 0.95
SRSF1-205ENST00000582730 CC2D2AQ9P2K1 1620 aa20.96■□□□□ 0.95
SRSF1-205ENST00000582730 PELP1Q8IZL8 1130 aaKnown RBP20.95■□□□□ 0.94
SRSF1-205ENST00000582730 CCER1Q8TC90 406 aaPredicted RBP20.93■□□□□ 0.94
SRSF1-205ENST00000582730 CADPSQ9ULU8 1353 aa20.9■□□□□ 0.94
SRSF1-205ENST00000582730 APLP2Q06481 763 aa20.88■□□□□ 0.93
SRSF1-205ENST00000582730 KIF27Q86VH2 1401 aa20.88■□□□□ 0.93
SRSF1-205ENST00000582730 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.93
SRSF1-205ENST00000582730 PRXQ9BXM0 1461 aa20.81■□□□□ 0.92
SRSF1-205ENST00000582730 PRDM2Q13029 1718 aa20.79■□□□□ 0.92
SRSF1-205ENST00000582730 ERICH3Q5RHP9 1530 aa20.77■□□□□ 0.92
SRSF1-205ENST00000582730 SCAF1Q9H7N4 1312 aaKnown RBP20.76■□□□□ 0.91
SRSF1-205ENST00000582730 CUX2O14529 1486 aa20.76■□□□□ 0.91
SRSF1-205ENST00000582730 HNRNPUL2Q1KMD3 747 aaKnown RBP20.73■□□□□ 0.91
SRSF1-205ENST00000582730 FGD5Q6ZNL6 1462 aa20.71■□□□□ 0.91
SRSF1-205ENST00000582730 FANCD2Q9BXW9 1451 aa20.71■□□□□ 0.91
SRSF1-205ENST00000582730 NESP48681 1621 aa20.67■□□□□ 0.9
SRSF1-205ENST00000582730 ARAP1Q96P48 1450 aa20.64■□□□□ 0.89
SRSF1-205ENST00000582730 IGF1RP08069 1367 aa20.63■□□□□ 0.89
SRSF1-205ENST00000582730 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
SRSF1-205ENST00000582730 RAD54L2Q9Y4B4 1467 aa20.55■□□□□ 0.88
SRSF1-205ENST00000582730 DNAJC5BQ9UF47 199 aa20.54■□□□□ 0.88
SRSF1-205ENST00000582730 KANK4Q5T7N3 995 aaPredicted RBP20.53■□□□□ 0.88
SRSF1-205ENST00000582730 ARHGAP35Q9NRY4 1499 aa20.53■□□□□ 0.88
SRSF1-205ENST00000582730 DNMBPQ6XZF7 1577 aa20.52■□□□□ 0.88
SRSF1-205ENST00000582730 TOPBP1Q92547 1522 aa20.52■□□□□ 0.88
SRSF1-205ENST00000582730 POLA1P09884 1462 aaPredicted RBP20.49■□□□□ 0.87
SRSF1-205ENST00000582730 P3H3Q8IVL6 736 aa20.46■□□□□ 0.87
SRSF1-205ENST00000582730 LAMC3Q9Y6N6 1575 aa20.44■□□□□ 0.86
SRSF1-205ENST00000582730 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
SRSF1-205ENST00000582730 ATP1B4Q9UN42 357 aaPredicted RBP20.42■□□□□ 0.86
SRSF1-205ENST00000582730 URB2Q14146 1524 aaKnown RBP20.4■□□□□ 0.86
SRSF1-205ENST00000582730 PDS5BQ9NTI5 1447 aa20.38■□□□□ 0.85
SRSF1-205ENST00000582730 TDRD9Q8NDG6 1382 aaKnown RBP20.36■□□□□ 0.85
SRSF1-205ENST00000582730 ITGAEP38570 1179 aa20.36■□□□□ 0.85
SRSF1-205ENST00000582730 ACIN1Q9UKV3 1341 aaKnown RBP20.33■□□□□ 0.84
SRSF1-205ENST00000582730 NEUROD1Q13562 356 aa20.29■□□□□ 0.84
SRSF1-205ENST00000582730 DIEXFQ68CQ4 756 aaKnown RBP20.28■□□□□ 0.84
SRSF1-205ENST00000582730 FHOD3Q2V2M9 1422 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms