RNA–Protein interactions for RNA: ENST00000361367.6

CTR9-201, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTR9, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-201ENST00000361367 NISCHQ9Y2I1 1504 aa25.55■■□□□ 1.68
CTR9-201ENST00000361367 DCAF8L2P0C7V8 631 aa25.2■■□□□ 1.62
CTR9-201ENST00000361367 SUPT5HO00267 1087 aaKnown RBP23.64■■□□□ 1.38
CTR9-201ENST00000361367 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
CTR9-201ENST00000361367 EHMT2Q96KQ7 1210 aa22.52■■□□□ 1.19
CTR9-201ENST00000361367 FAM9AQ8IZU1 332 aaPredicted RBP22.2■■□□□ 1.14
CTR9-201ENST00000361367 ABCC9O60706 1549 aa22.06■■□□□ 1.12
CTR9-201ENST00000361367 TRIM41Q8WV44 630 aa21.99■■□□□ 1.11
CTR9-201ENST00000361367 APLP2Q06481 763 aa21.99■■□□□ 1.11
CTR9-201ENST00000361367 RANGAP1P46060 587 aaPredicted RBP21.73■■□□□ 1.07
CTR9-201ENST00000361367 PABPN1Q86U42 306 aaKnown RBP eCLIP21.66■■□□□ 1.06
CTR9-201ENST00000361367 TTBK1Q5TCY1 1321 aaPredicted RBP21.64■■□□□ 1.06
CTR9-201ENST00000361367 UBTFP17480 764 aaKnown RBP21.6■■□□□ 1.05
CTR9-201ENST00000361367 ATP1B4Q9UN42 357 aaPredicted RBP21.48■■□□□ 1.03
CTR9-201ENST00000361367 PCGF6Q9BYE7 350 aa21.4■■□□□ 1.02
CTR9-201ENST00000361367 CHIC1Q5VXU3 224 aa21.26■□□□□ 0.99
CTR9-201ENST00000361367 CCDC180Q9P1Z9 1646 aa21.22■□□□□ 0.99
CTR9-201ENST00000361367 ZCCHC6Q5VYS8 1495 aaKnown RBP21.17■□□□□ 0.98
CTR9-201ENST00000361367 LOC105371045A0A1W2PR82 267 aa21.04■□□□□ 0.96
CTR9-201ENST00000361367 PPARGC1BQ86YN6 1023 aaKnown RBP21.04■□□□□ 0.96
CTR9-201ENST00000361367 CCER1Q8TC90 406 aaPredicted RBP21.01■□□□□ 0.95
CTR9-201ENST00000361367 SCRIBQ14160 1630 aa20.99■□□□□ 0.95
CTR9-201ENST00000361367 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.91■□□□□ 0.94
CTR9-201ENST00000361367 HNRNPUL2Q1KMD3 747 aaKnown RBP20.91■□□□□ 0.94
CTR9-201ENST00000361367 ZEB1P37275 1124 aaPredicted RBP20.85■□□□□ 0.93
CTR9-201ENST00000361367 TRIM26Q12899 539 aaPredicted RBP20.75■□□□□ 0.91
CTR9-201ENST00000361367 RB1CC1Q8TDY2 1594 aa20.72■□□□□ 0.91
CTR9-201ENST00000361367 ITGAEP38570 1179 aa20.71■□□□□ 0.91
CTR9-201ENST00000361367 MYT1LQ9UL68 1186 aa20.64■□□□□ 0.89
CTR9-201ENST00000361367 NACADO15069 1562 aa20.58■□□□□ 0.89
CTR9-201ENST00000361367 FBLN2P98095 1184 aa20.56■□□□□ 0.88
CTR9-201ENST00000361367 PELP1Q8IZL8 1130 aaKnown RBP20.46■□□□□ 0.87
CTR9-201ENST00000361367 CSRNP3Q8WYN3 585 aa20.46■□□□□ 0.87
CTR9-201ENST00000361367 FAM50AQ14320 339 aaKnown RBP20.34■□□□□ 0.85
CTR9-201ENST00000361367 DCAF1Q9Y4B6 1507 aa20.32■□□□□ 0.84
CTR9-201ENST00000361367 RSF1Q96T23 1441 aaPredicted RBP20.3■□□□□ 0.84
CTR9-201ENST00000361367 P3H3Q8IVL6 736 aa20.28■□□□□ 0.84
CTR9-201ENST00000361367 CENPBP07199 599 aaPredicted RBP20.27■□□□□ 0.84
CTR9-201ENST00000361367 HRCP23327 699 aa20.18■□□□□ 0.82
CTR9-201ENST00000361367 ARID3CA6NKF2 412 aa20.16■□□□□ 0.82
CTR9-201ENST00000361367 BAZ1BQ9UIG0 1483 aaKnown RBP20.13■□□□□ 0.81
CTR9-201ENST00000361367 POLR3GLQ9BT43 218 aa20.12■□□□□ 0.81
CTR9-201ENST00000361367 TRIM52Q96A61 297 aa20.11■□□□□ 0.81
CTR9-201ENST00000361367 YTHDC1Q96MU7 727 aaKnown RBP20.07■□□□□ 0.8
CTR9-201ENST00000361367 CECR2Q9BXF3 1484 aa20.06■□□□□ 0.8
CTR9-201ENST00000361367 BAZ1AQ9NRL2 1556 aaPredicted RBP20.05■□□□□ 0.8
CTR9-201ENST00000361367 CDK11AQ9UQ88 783 aaPredicted RBP20■□□□□ 0.79
CTR9-201ENST00000361367 NEUROD1Q13562 356 aa19.92■□□□□ 0.78
CTR9-201ENST00000361367 CHMP7Q8WUX9 453 aaPredicted RBP19.92■□□□□ 0.78
CTR9-201ENST00000361367 ZNF777Q9ULD5 760 aaPredicted RBP19.91■□□□□ 0.78
CTR9-201ENST00000361367 NEFLP07196 543 aa19.9■□□□□ 0.78
CTR9-201ENST00000361367 WRNQ14191 1432 aaPredicted RBP eCLIP19.9■□□□□ 0.78
CTR9-201ENST00000361367 CNGB1Q14028 1251 aaPredicted RBP19.89■□□□□ 0.77
CTR9-201ENST00000361367 MYO15BQ96JP2 1530 aa19.86■□□□□ 0.77
CTR9-201ENST00000361367 NPM1P06748 294 aaKnown RBP eCLIP19.82■□□□□ 0.76
CTR9-201ENST00000361367 SLC4A1APQ9BWU0 796 aaKnown RBP19.79■□□□□ 0.76
CTR9-201ENST00000361367 MROH2BQ7Z745 1585 aa19.78■□□□□ 0.76
CTR9-201ENST00000361367 EEA1Q15075 1411 aa19.77■□□□□ 0.76
CTR9-201ENST00000361367 ZNF326Q5BKZ1 582 aaKnown RBP19.77■□□□□ 0.76
CTR9-201ENST00000361367 ERCC6Q03468 1493 aa19.73■□□□□ 0.75
CTR9-201ENST00000361367 CLIP1P30622 1438 aa19.72■□□□□ 0.75
CTR9-201ENST00000361367 KIF27Q86VH2 1401 aa19.71■□□□□ 0.75
CTR9-201ENST00000361367 DIEXFQ68CQ4 756 aaKnown RBP19.66■□□□□ 0.74
CTR9-201ENST00000361367 SMARCA2P51531 1590 aa19.66■□□□□ 0.74
CTR9-201ENST00000361367 GOLGA3Q08378 1498 aa19.65■□□□□ 0.74
CTR9-201ENST00000361367 MTUS2Q5JR59 1369 aa19.63■□□□□ 0.73
CTR9-201ENST00000361367 CCDC88BA6NC98 1476 aa19.61■□□□□ 0.73
CTR9-201ENST00000361367 CHIC2Q9UKJ5 165 aa19.56■□□□□ 0.72
CTR9-201ENST00000361367 CEP162Q5TB80 1403 aa19.55■□□□□ 0.72
CTR9-201ENST00000361367 ESF1Q9H501 851 aaKnown RBP19.54■□□□□ 0.72
CTR9-201ENST00000361367 CEP164Q9UPV0 1460 aa19.53■□□□□ 0.72
CTR9-201ENST00000361367 TSPY4P0CV99 314 aa19.52■□□□□ 0.71
CTR9-201ENST00000361367 TSPY10P0CW01 314 aa19.52■□□□□ 0.71
CTR9-201ENST00000361367 BCANQ96GW7 911 aa19.5■□□□□ 0.71
CTR9-201ENST00000361367 ERICH6Q7L0X2 663 aa19.49■□□□□ 0.71
CTR9-201ENST00000361367 PDS5BQ9NTI5 1447 aa19.49■□□□□ 0.71
CTR9-201ENST00000361367 TNIKQ9UKE5 1360 aa19.48■□□□□ 0.71
CTR9-201ENST00000361367 CUX2O14529 1486 aa19.48■□□□□ 0.71
CTR9-201ENST00000361367 PLEKHD1A6NEE1 506 aa19.48■□□□□ 0.71
CTR9-201ENST00000361367 KCNH8Q96L42 1107 aa19.46■□□□□ 0.71
CTR9-201ENST00000361367 WIZO95785 1651 aa19.45■□□□□ 0.7
CTR9-201ENST00000361367 ATAD2BQ9ULI0 1458 aa19.45■□□□□ 0.7
CTR9-201ENST00000361367 CARMIL1Q5VZK9 1371 aa19.43■□□□□ 0.7
CTR9-201ENST00000361367 TOP2AP11388 1531 aaKnown RBP19.43■□□□□ 0.7
CTR9-201ENST00000361367 SOGA1O94964 1423 aa19.43■□□□□ 0.7
CTR9-201ENST00000361367 ZNF316A6NFI3 1004 aaPredicted RBP19.43■□□□□ 0.7
CTR9-201ENST00000361367 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.42■□□□□ 0.76e-8■□□□□ 9.9
CTR9-201ENST00000361367 CHGAP10645 457 aaKnown RBP19.42■□□□□ 0.7
CTR9-201ENST00000361367 ANP32CO43423 234 aa19.41■□□□□ 0.7
CTR9-201ENST00000361367 TONSLQ96HA7 1378 aa19.4■□□□□ 0.7
CTR9-201ENST00000361367 CADPSQ9ULU8 1353 aa19.4■□□□□ 0.7
CTR9-201ENST00000361367 STAG3Q9UJ98 1225 aa19.37■□□□□ 0.69
CTR9-201ENST00000361367 ABCC8Q09428 1581 aa19.37■□□□□ 0.69
CTR9-201ENST00000361367 SMARCA4P51532 1647 aa19.35■□□□□ 0.69
CTR9-201ENST00000361367 PLPPR3Q6T4P5 718 aa19.34■□□□□ 0.69
CTR9-201ENST00000361367 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
CTR9-201ENST00000361367 RRP7BPQ9NSQ0 103 aa19.31■□□□□ 0.68
CTR9-201ENST00000361367 CFDP1Q9UEE9 299 aaPredicted RBP19.29■□□□□ 0.68
CTR9-201ENST00000361367 EIF4G1Q04637 1599 aaKnown RBP19.25■□□□□ 0.67
CTR9-201ENST00000361367 FHAD1B1AJZ9 1412 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms