RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 NISCHQ9Y2I1 1504 aa27.04■■□□□ 1.92
VRK3-209ENST00000594948 CCDC180Q9P1Z9 1646 aa23.11■■□□□ 1.29
VRK3-209ENST00000594948 ZCCHC6Q5VYS8 1495 aaKnown RBP22.95■■□□□ 1.27
VRK3-209ENST00000594948 SHROOM4Q9ULL8 1493 aa22.83■■□□□ 1.24
VRK3-209ENST00000594948 SUPT5HO00267 1087 aaKnown RBP22.51■■□□□ 1.19
VRK3-209ENST00000594948 DCAF1Q9Y4B6 1507 aa22.37■■□□□ 1.17
VRK3-209ENST00000594948 CHIC1Q5VXU3 224 aa22.18■■□□□ 1.14
VRK3-209ENST00000594948 MYO15BQ96JP2 1530 aa22.17■■□□□ 1.14
VRK3-209ENST00000594948 HRCP23327 699 aa21.96■■□□□ 1.11
VRK3-209ENST00000594948 DCAF8L2P0C7V8 631 aa21.87■■□□□ 1.09
VRK3-209ENST00000594948 ABCC9O60706 1549 aa21.75■■□□□ 1.07
VRK3-209ENST00000594948 PCGF6Q9BYE7 350 aa21.6■■□□□ 1.05
VRK3-209ENST00000594948 RSF1Q96T23 1441 aaPredicted RBP21.4■■□□□ 1.02
VRK3-209ENST00000594948 SCRIBQ14160 1630 aa21.38■■□□□ 1.01
VRK3-209ENST00000594948 LOC105371045A0A1W2PR82 267 aa21.36■■□□□ 1.01
VRK3-209ENST00000594948 RB1CC1Q8TDY2 1594 aa21.35■■□□□ 1.01
VRK3-209ENST00000594948 TRIM26Q12899 539 aaPredicted RBP21.34■■□□□ 1.01
VRK3-209ENST00000594948 PPARGC1BQ86YN6 1023 aaKnown RBP21.22■□□□□ 0.99
VRK3-209ENST00000594948 NACADO15069 1562 aa21.2■□□□□ 0.98
VRK3-209ENST00000594948 ZEB1P37275 1124 aaPredicted RBP21.11■□□□□ 0.97
VRK3-209ENST00000594948 TRIM41Q8WV44 630 aa21.08■□□□□ 0.96
VRK3-209ENST00000594948 MROH2BQ7Z745 1585 aa20.95■□□□□ 0.94
VRK3-209ENST00000594948 CECR2Q9BXF3 1484 aa20.92■□□□□ 0.94
VRK3-209ENST00000594948 BAZ1AQ9NRL2 1556 aaPredicted RBP20.91■□□□□ 0.94
VRK3-209ENST00000594948 WIZO95785 1651 aa20.89■□□□□ 0.93
VRK3-209ENST00000594948 EIF4G1Q04637 1599 aaKnown RBP20.87■□□□□ 0.93
VRK3-209ENST00000594948 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
VRK3-209ENST00000594948 TOP2AP11388 1531 aaKnown RBP20.66■□□□□ 0.9
VRK3-209ENST00000594948 SMARCA4P51532 1647 aa20.58■□□□□ 0.89
VRK3-209ENST00000594948 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
VRK3-209ENST00000594948 SMARCA2P51531 1590 aa20.52■□□□□ 0.88
VRK3-209ENST00000594948 UNC13AQ9UPW8 1703 aa20.52■□□□□ 0.88
VRK3-209ENST00000594948 PELP1Q8IZL8 1130 aaKnown RBP20.46■□□□□ 0.87
VRK3-209ENST00000594948 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
VRK3-209ENST00000594948 EEA1Q15075 1411 aa20.44■□□□□ 0.86
VRK3-209ENST00000594948 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
VRK3-209ENST00000594948 EHMT2Q96KQ7 1210 aa20.38■□□□□ 0.85
VRK3-209ENST00000594948 TNIKQ9UKE5 1360 aa20.36■□□□□ 0.85
VRK3-209ENST00000594948 CEP162Q5TB80 1403 aa20.33■□□□□ 0.85
VRK3-209ENST00000594948 SCAF1Q9H7N4 1312 aaKnown RBP20.3■□□□□ 0.84
VRK3-209ENST00000594948 CCER1Q8TC90 406 aaPredicted RBP20.28■□□□□ 0.84
VRK3-209ENST00000594948 PEG3Q9GZU2 1588 aa20.28■□□□□ 0.84
VRK3-209ENST00000594948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.24■□□□□ 0.83
VRK3-209ENST00000594948 SOGA1O94964 1423 aa20.23■□□□□ 0.83
VRK3-209ENST00000594948 GOLGA3Q08378 1498 aa20.21■□□□□ 0.83
VRK3-209ENST00000594948 KIF21BO75037 1637 aa20.17■□□□□ 0.82
VRK3-209ENST00000594948 CSRNP3Q8WYN3 585 aa20.17■□□□□ 0.82
VRK3-209ENST00000594948 BICRAQ9NZM4 1560 aa20.15■□□□□ 0.82
VRK3-209ENST00000594948 ACIN1Q9UKV3 1341 aaKnown RBP20.11■□□□□ 0.81
VRK3-209ENST00000594948 RUSC2Q8N2Y8 1516 aa20.11■□□□□ 0.81
VRK3-209ENST00000594948 CEP164Q9UPV0 1460 aa20.09■□□□□ 0.81
VRK3-209ENST00000594948 DIEXFQ68CQ4 756 aaKnown RBP20.06■□□□□ 0.8
VRK3-209ENST00000594948 SYNJ1O43426 1573 aa20.04■□□□□ 0.8
VRK3-209ENST00000594948 BAZ1BQ9UIG0 1483 aaKnown RBP20.03■□□□□ 0.8
VRK3-209ENST00000594948 CENPBP07199 599 aaPredicted RBP20.01■□□□□ 0.79
VRK3-209ENST00000594948 UBTFP17480 764 aaKnown RBP19.99■□□□□ 0.79
VRK3-209ENST00000594948 NEUROD1Q13562 356 aa19.96■□□□□ 0.79
VRK3-209ENST00000594948 ZNF316A6NFI3 1004 aaPredicted RBP19.92■□□□□ 0.78
VRK3-209ENST00000594948 VPS8Q8N3P4 1428 aa19.92■□□□□ 0.78
VRK3-209ENST00000594948 ATAD2BQ9ULI0 1458 aa19.9■□□□□ 0.78
VRK3-209ENST00000594948 CLIP1P30622 1438 aa19.9■□□□□ 0.78
VRK3-209ENST00000594948 TOP2BQ02880 1626 aa19.87■□□□□ 0.77
VRK3-209ENST00000594948 BIVM-ERCC5R4GMW8 1640 aa19.86■□□□□ 0.77
VRK3-209ENST00000594948 TTBK1Q5TCY1 1321 aaPredicted RBP19.84■□□□□ 0.77
VRK3-209ENST00000594948 ERICH3Q5RHP9 1530 aa19.8■□□□□ 0.76
VRK3-209ENST00000594948 GTF3C3Q9Y5Q9 886 aa19.79■□□□□ 0.76
VRK3-209ENST00000594948 RAPGEF2Q9Y4G8 1499 aa19.77■□□□□ 0.76
VRK3-209ENST00000594948 PABPN1Q86U42 306 aaKnown RBP eCLIP19.76■□□□□ 0.75
VRK3-209ENST00000594948 CLSPNQ9HAW4 1339 aa19.7■□□□□ 0.74
VRK3-209ENST00000594948 APLP2Q06481 763 aa19.69■□□□□ 0.74
VRK3-209ENST00000594948 PRXQ9BXM0 1461 aa19.66■□□□□ 0.74
VRK3-209ENST00000594948 HNRNPUL2Q1KMD3 747 aaKnown RBP19.65■□□□□ 0.74
VRK3-209ENST00000594948 HMGXB3Q12766 1538 aa19.64■□□□□ 0.73
VRK3-209ENST00000594948 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
VRK3-209ENST00000594948 MYT1Q01538 1121 aa19.57■□□□□ 0.72
VRK3-209ENST00000594948 PRDM2Q13029 1718 aa19.56■□□□□ 0.72
VRK3-209ENST00000594948 MIER1Q8N108 512 aa19.55■□□□□ 0.72
VRK3-209ENST00000594948 CUX2O14529 1486 aa19.53■□□□□ 0.72
VRK3-209ENST00000594948 NCAPD3P42695 1498 aa19.53■□□□□ 0.72
VRK3-209ENST00000594948 RRBP1Q9P2E9 1410 aaKnown RBP19.52■□□□□ 0.72
VRK3-209ENST00000594948 CUX1P39880 1505 aa19.51■□□□□ 0.71
VRK3-209ENST00000594948 DHX57Q6P158 1386 aaKnown RBP19.51■□□□□ 0.71
VRK3-209ENST00000594948 KIF27Q86VH2 1401 aa19.48■□□□□ 0.71
VRK3-209ENST00000594948 CFTRP13569 1480 aa19.42■□□□□ 0.7
VRK3-209ENST00000594948 YTHDC1Q96MU7 727 aaKnown RBP19.41■□□□□ 0.7
VRK3-209ENST00000594948 MAP3K1Q13233 1512 aa19.41■□□□□ 0.7
VRK3-209ENST00000594948 ARHGAP35Q9NRY4 1499 aa19.38■□□□□ 0.69
VRK3-209ENST00000594948 KANK4Q5T7N3 995 aaPredicted RBP19.34■□□□□ 0.69
VRK3-209ENST00000594948 CCNB3Q8WWL7 1395 aa19.33■□□□□ 0.69
VRK3-209ENST00000594948 RANGAP1P46060 587 aaPredicted RBP19.31■□□□□ 0.68
VRK3-209ENST00000594948 TIAM1Q13009 1591 aa19.3■□□□□ 0.68
VRK3-209ENST00000594948 CFAP43Q8NDM7 1665 aa19.25■□□□□ 0.67
VRK3-209ENST00000594948 MAPKBP1O60336 1514 aa19.2■□□□□ 0.66
VRK3-209ENST00000594948 IGF1RP08069 1367 aa19.18■□□□□ 0.66
VRK3-209ENST00000594948 LRRC9Q6ZRR7 1453 aa19.16■□□□□ 0.66
VRK3-209ENST00000594948 RAB3GAP2Q9H2M9 1393 aa19.15■□□□□ 0.66
VRK3-209ENST00000594948 FHAD1B1AJZ9 1412 aa19.14■□□□□ 0.65
VRK3-209ENST00000594948 SETD5Q9C0A6 1442 aa19.13■□□□□ 0.65
VRK3-209ENST00000594948 CARMIL1Q5VZK9 1371 aa19.11■□□□□ 0.65
VRK3-209ENST00000594948 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms