Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
MMP28Q9H239 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
MMP28Q9H239 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
MMP28Q9H239 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
MMP28Q9H239 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 AL607033.1-201ENST00000623900 1599 ntBASIC13.04□□□□□ -0.32
MMP28Q9H239 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.04□□□□□ -0.32
MMP28Q9H239 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 EEF1DP4-201ENST00000446006 880 ntBASIC13.04□□□□□ -0.32
MMP28Q9H239 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.04□□□□□ -0.32
MMP28Q9H239 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.04□□□□□ -0.32
MMP28Q9H239 AC015911.4-201ENST00000588022 1070 ntBASIC13.04□□□□□ -0.32
MMP28Q9H239 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 MIR193BHG-211ENST00000641433 5365 ntBASIC13.04□□□□□ -0.32
MMP28Q9H239 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 AGGF1P1-201ENST00000509500 2073 ntBASIC13.04□□□□□ -0.32
MMP28Q9H239 TUBB3P1-201ENST00000405796 1332 ntBASIC13.04□□□□□ -0.32
MMP28Q9H239 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
MMP28Q9H239 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
MMP28Q9H239 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
MMP28Q9H239 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.04□□□□□ -0.32
MMP28Q9H239 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.03□□□□□ -0.32
MMP28Q9H239 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
MMP28Q9H239 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms