RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 NISCHQ9Y2I1 1504 aa22.84■■□□□ 1.25
COL2A1-201ENST00000337299 DCAF8L2P0C7V8 631 aa22.5■■□□□ 1.19
COL2A1-201ENST00000337299 SUPT5HO00267 1087 aaKnown RBP21.98■■□□□ 1.11
COL2A1-201ENST00000337299 PCGF6Q9BYE7 350 aa21.69■■□□□ 1.06
COL2A1-201ENST00000337299 SHROOM4Q9ULL8 1493 aa21.57■■□□□ 1.04
COL2A1-201ENST00000337299 PELP1Q8IZL8 1130 aaKnown RBP21.41■■□□□ 1.02
COL2A1-201ENST00000337299 HRCP23327 699 aa21.27■■□□□ 1
COL2A1-201ENST00000337299 PPARGC1BQ86YN6 1023 aaKnown RBP21.19■□□□□ 0.98
COL2A1-201ENST00000337299 EHMT2Q96KQ7 1210 aa21.17■□□□□ 0.98
COL2A1-201ENST00000337299 MYT1Q01538 1121 aa20.81■□□□□ 0.92
COL2A1-201ENST00000337299 CENPBP07199 599 aaPredicted RBP20.71■□□□□ 0.91
COL2A1-201ENST00000337299 FAM9AQ8IZU1 332 aaPredicted RBP20.67■□□□□ 0.9
COL2A1-201ENST00000337299 ZEB1P37275 1124 aaPredicted RBP20.63■□□□□ 0.89
COL2A1-201ENST00000337299 TTBK1Q5TCY1 1321 aaPredicted RBP20.59■□□□□ 0.89
COL2A1-201ENST00000337299 YTHDC1Q96MU7 727 aaKnown RBP20.56■□□□□ 0.88
COL2A1-201ENST00000337299 CCER1Q8TC90 406 aaPredicted RBP20.47■□□□□ 0.87
COL2A1-201ENST00000337299 LOC105371045A0A1W2PR82 267 aa20.43■□□□□ 0.86
COL2A1-201ENST00000337299 TRIM26Q12899 539 aaPredicted RBP20.43■□□□□ 0.86
COL2A1-201ENST00000337299 CHIC1Q5VXU3 224 aa20.33■□□□□ 0.85
COL2A1-201ENST00000337299 GTF3C3Q9Y5Q9 886 aa20.2■□□□□ 0.82
COL2A1-201ENST00000337299 SCAF1Q9H7N4 1312 aaKnown RBP20.11■□□□□ 0.81
COL2A1-201ENST00000337299 TRIM41Q8WV44 630 aa20.05■□□□□ 0.8
COL2A1-201ENST00000337299 ERICH6Q7L0X2 663 aa19.99■□□□□ 0.79
COL2A1-201ENST00000337299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.98■□□□□ 0.79
COL2A1-201ENST00000337299 DIEXFQ68CQ4 756 aaKnown RBP19.97■□□□□ 0.79
COL2A1-201ENST00000337299 ACIN1Q9UKV3 1341 aaKnown RBP19.95■□□□□ 0.78
COL2A1-201ENST00000337299 NEUROD1Q13562 356 aa19.81■□□□□ 0.76
COL2A1-201ENST00000337299 APLP2Q06481 763 aa19.77■□□□□ 0.76
COL2A1-201ENST00000337299 RANGAP1P46060 587 aaPredicted RBP19.7■□□□□ 0.74
COL2A1-201ENST00000337299 NEFLP07196 543 aa19.65■□□□□ 0.74
COL2A1-201ENST00000337299 ABCC9O60706 1549 aa19.54■□□□□ 0.72
COL2A1-201ENST00000337299 BCANQ96GW7 911 aa19.54■□□□□ 0.72
COL2A1-201ENST00000337299 UBTFP17480 764 aaKnown RBP19.52■□□□□ 0.71
COL2A1-201ENST00000337299 HNRNPUL2Q1KMD3 747 aaKnown RBP19.5■□□□□ 0.71
COL2A1-201ENST00000337299 MYO15BQ96JP2 1530 aa19.48■□□□□ 0.71
COL2A1-201ENST00000337299 PABPN1Q86U42 306 aaKnown RBP eCLIP19.38■□□□□ 0.696e-7■□□□□ 10.3
COL2A1-201ENST00000337299 ZNF316A6NFI3 1004 aaPredicted RBP19.33■□□□□ 0.69
COL2A1-201ENST00000337299 DCAF1Q9Y4B6 1507 aa19.3■□□□□ 0.68
COL2A1-201ENST00000337299 ITGAEP38570 1179 aa19.17■□□□□ 0.66
COL2A1-201ENST00000337299 ATP1B4Q9UN42 357 aaPredicted RBP19.13■□□□□ 0.65
COL2A1-201ENST00000337299 MIER1Q8N108 512 aa19.1■□□□□ 0.65
COL2A1-201ENST00000337299 BCL11AQ9H165 835 aa19.06■□□□□ 0.64
COL2A1-201ENST00000337299 ANP32EQ9BTT0 268 aa19■□□□□ 0.63
COL2A1-201ENST00000337299 RTL5Q5HYW3 569 aaPredicted RBP18.98■□□□□ 0.63
COL2A1-201ENST00000337299 FKBP8Q14318 412 aa18.97■□□□□ 0.63
COL2A1-201ENST00000337299 CNGB1Q14028 1251 aaPredicted RBP18.96■□□□□ 0.63
COL2A1-201ENST00000337299 ZCCHC6Q5VYS8 1495 aaKnown RBP18.94■□□□□ 0.62
COL2A1-201ENST00000337299 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
COL2A1-201ENST00000337299 CCDC180Q9P1Z9 1646 aa18.8■□□□□ 0.6
COL2A1-201ENST00000337299 CSRNP3Q8WYN3 585 aa18.72■□□□□ 0.59
COL2A1-201ENST00000337299 POLR3GLQ9BT43 218 aa18.72■□□□□ 0.59
COL2A1-201ENST00000337299 NBR1Q14596 966 aa18.72■□□□□ 0.59
COL2A1-201ENST00000337299 EIF5BO60841 1220 aaKnown RBP18.71■□□□□ 0.59
COL2A1-201ENST00000337299 DAXXQ9UER7 740 aaPredicted RBP18.71■□□□□ 0.59
COL2A1-201ENST00000337299 SUPT16HQ9Y5B9 1047 aaKnown RBP18.71■□□□□ 0.59
COL2A1-201ENST00000337299 SCRIBQ14160 1630 aa18.71■□□□□ 0.59
COL2A1-201ENST00000337299 CLSPNQ9HAW4 1339 aa18.71■□□□□ 0.59
COL2A1-201ENST00000337299 TRIM52Q96A61 297 aa18.68■□□□□ 0.58
COL2A1-201ENST00000337299 ANP32CO43423 234 aa18.64■□□□□ 0.58
COL2A1-201ENST00000337299 IRX6P78412 446 aaPredicted RBP18.62■□□□□ 0.57
COL2A1-201ENST00000337299 DDX10Q13206 875 aaKnown RBP18.6■□□□□ 0.57
COL2A1-201ENST00000337299 TSHZ2Q9NRE2 1034 aa18.55■□□□□ 0.56
COL2A1-201ENST00000337299 NPM2Q86SE8 214 aaKnown RBP18.53■□□□□ 0.56
COL2A1-201ENST00000337299 ANP32AP39687 249 aaKnown RBP18.46■□□□□ 0.55
COL2A1-201ENST00000337299 HNRNPUQ00839 825 aaKnown RBP eCLIP18.46■□□□□ 0.55
COL2A1-201ENST00000337299 RTN4Q9NQC3 1192 aaKnown RBP18.46■□□□□ 0.55
COL2A1-201ENST00000337299 FAM50AQ14320 339 aaKnown RBP18.46■□□□□ 0.55
COL2A1-201ENST00000337299 HIRIP3Q9BW71 556 aaPredicted RBP18.44■□□□□ 0.54
COL2A1-201ENST00000337299 RBM19Q9Y4C8 960 aaKnown RBP18.42■□□□□ 0.54
COL2A1-201ENST00000337299 MYT1LQ9UL68 1186 aa18.37■□□□□ 0.53
COL2A1-201ENST00000337299 RSF1Q96T23 1441 aaPredicted RBP18.33■□□□□ 0.53
COL2A1-201ENST00000337299 DEKP35659 375 aaKnown RBP18.31■□□□□ 0.52
COL2A1-201ENST00000337299 ZBTB47Q9UFB7 747 aaPredicted RBP18.29■□□□□ 0.52
COL2A1-201ENST00000337299 P3H3Q8IVL6 736 aa18.29■□□□□ 0.52
COL2A1-201ENST00000337299 FAM9BQ8IZU0 186 aa18.26■□□□□ 0.51
COL2A1-201ENST00000337299 CECR2Q9BXF3 1484 aa18.19■□□□□ 0.5
COL2A1-201ENST00000337299 FBLN2P98095 1184 aa18.19■□□□□ 0.5
COL2A1-201ENST00000337299 CCDC136Q96JN2 1154 aa18.17■□□□□ 0.5
COL2A1-201ENST00000337299 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.17■□□□□ 0.5
COL2A1-201ENST00000337299 SENP3-EIF4A1A0A087X0R7 540 aa18.17■□□□□ 0.5
COL2A1-201ENST00000337299 ARID3CA6NKF2 412 aa18.17■□□□□ 0.5
COL2A1-201ENST00000337299 ARXQ96QS3 562 aa18.12■□□□□ 0.49
COL2A1-201ENST00000337299 KCNH8Q96L42 1107 aa18.12■□□□□ 0.49
COL2A1-201ENST00000337299 ZNF326Q5BKZ1 582 aaKnown RBP18.11■□□□□ 0.49
COL2A1-201ENST00000337299 CEP162Q5TB80 1403 aa18.09■□□□□ 0.49
COL2A1-201ENST00000337299 B4GALNT3Q6L9W6 998 aa18.09■□□□□ 0.49
COL2A1-201ENST00000337299 NOP58Q9Y2X3 529 aaKnown RBP18.08■□□□□ 0.49
COL2A1-201ENST00000337299 RB1CC1Q8TDY2 1594 aa18.08■□□□□ 0.49
COL2A1-201ENST00000337299 SALL2Q9Y467 1007 aaPredicted RBP18.07■□□□□ 0.48
COL2A1-201ENST00000337299 LAS1LQ9Y4W2 734 aaKnown RBP18.07■□□□□ 0.48
COL2A1-201ENST00000337299 NACADO15069 1562 aa18.03■□□□□ 0.48
COL2A1-201ENST00000337299 PRKCSHP14314 528 aaPredicted RBP18.01■□□□□ 0.47
COL2A1-201ENST00000337299 MRS2Q9HD23 443 aa18.01■□□□□ 0.47
COL2A1-201ENST00000337299 GLIPR1L2Q4G1C9 344 aa18■□□□□ 0.47
COL2A1-201ENST00000337299 TONSLQ96HA7 1378 aa17.99■□□□□ 0.47
COL2A1-201ENST00000337299 NEFMP07197 916 aa17.98■□□□□ 0.47
COL2A1-201ENST00000337299 PPP4R2Q9NY27 417 aa17.94■□□□□ 0.46
COL2A1-201ENST00000337299 SIN3AQ96ST3 1273 aa17.93■□□□□ 0.46
COL2A1-201ENST00000337299 ANO8Q9HCE9 1232 aaPredicted RBP17.9■□□□□ 0.46
COL2A1-201ENST00000337299 CLIP1P30622 1438 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms