Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 EIF4A2-223ENST00000494445 629 ntTSL 212.66□□□□□ -0.382e-29■□□□□ 9
YBX3P16989 EIF4A2-209ENST00000461021 575 ntTSL 26.6□□□□□ -1.352e-29■□□□□ 9
YBX3P16989 SLC16A1-205ENST00000478835 452 ntTSL 1 (best)14.15□□□□□ -0.142e-9■□□□□ 9
YBX3P16989 TBC1D23-208ENST00000486274 4054 ntTSL 511.15□□□□□ -0.622e-7■□□□□ 9
YBX3P16989 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.94□□□□□ -1.32e-7■□□□□ 9
YBX3P16989 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.452e-7■□□□□ 9
YBX3P16989 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.481e-18■□□□□ 9
YBX3P16989 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.81■□□□□ 0.281e-18■□□□□ 9
YBX3P16989 SNRPC-203ENST00000374018 600 ntTSL 5 BASIC13.52□□□□□ -0.251e-18■□□□□ 9
YBX3P16989 SNRPC-204ENST00000474635 511 ntTSL 511.27□□□□□ -0.611e-18■□□□□ 9
YBX3P16989 EMP3-205ENST00000597057 406 ntTSL 214.97□□□□□ -0.013e-19■□□□□ 9
YBX3P16989 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.315e-10■□□□□ 9
YBX3P16989 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.565e-10■□□□□ 9
YBX3P16989 ATP5E-202ENST00000395659 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.551e-18■□□□□ 9
YBX3P16989 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.911e-18■□□□□ 9
YBX3P16989 ATP5E-201ENST00000243997 3665 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -11e-18■□□□□ 9
YBX3P16989 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC9.85□□□□□ -0.836e-7■□□□□ 9
YBX3P16989 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC22.03■■□□□ 1.123e-9■□□□□ 9
YBX3P16989 HDDC2-210ENST00000609574 607 ntTSL 222.03■■□□□ 1.123e-9■□□□□ 9
YBX3P16989 RHAG-203ENST00000618248 1203 ntTSL 5 BASIC13.91□□□□□ -0.186e-7■□□□□ 9
YBX3P16989 RHAG-201ENST00000229810 1283 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.286e-7■□□□□ 9
YBX3P16989 RHAG-202ENST00000371175 1912 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.746e-7■□□□□ 9
YBX3P16989 PTPRA-208ENST00000455631 1107 ntTSL 532.97■■■□□ 2.874e-8■□□□□ 9
YBX3P16989 RPS25-205ENST00000528547 189 ntTSL 37.25□□□□□ -1.252e-67■□□□□ 9
YBX3P16989 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.84■■■■□ 3.177e-7■□□□□ 9
YBX3P16989 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC22.37■■□□□ 1.173e-7■□□□□ 9
YBX3P16989 AMHR2-205ENST00000550839 887 ntTSL 322.35■■□□□ 1.173e-7■□□□□ 9
YBX3P16989 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.533e-7■□□□□ 9
YBX3P16989 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.113e-7■□□□□ 9
YBX3P16989 AMHR2-206ENST00000552233 2162 ntTSL 1 (best)14.16□□□□□ -0.143e-7■□□□□ 9
YBX3P16989 CERS2-211ENST00000559020 594 ntTSL 419.49■□□□□ 0.712e-9■□□□□ 9
YBX3P16989 EIF4G2-203ENST00000524932 1286 ntTSL 527.94■■■□□ 2.062e-9■□□□□ 9
YBX3P16989 EIF4G2-209ENST00000527015 582 ntTSL 37.23□□□□□ -1.252e-9■□□□□ 9
YBX3P16989 EIF4G2-224ENST00000532349 550 ntTSL 25.45□□□□□ -1.542e-9■□□□□ 9
YBX3P16989 ITIH3-205ENST00000465243 824 ntTSL 512.74□□□□□ -0.371e-7■□□□□ 9
YBX3P16989 ITIH3-201ENST00000416872 2220 ntTSL 2 BASIC12.19□□□□□ -0.461e-7■□□□□ 9
YBX3P16989 ITIH3-203ENST00000463893 529 ntTSL 411.47□□□□□ -0.571e-7■□□□□ 9
YBX3P16989 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.791e-7■□□□□ 9
YBX3P16989 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC9.69□□□□□ -0.861e-7■□□□□ 9
YBX3P16989 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.53e-16■□□□□ 9
YBX3P16989 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.41■■□□□ 1.823e-16■□□□□ 9
YBX3P16989 CHMP2A-204ENST00000597848 509 ntTSL 327.6■■■□□ 2.015e-16■□□□□ 9
YBX3P16989 CHMP2A-207ENST00000600804 592 ntTSL 215.49■□□□□ 0.075e-16■□□□□ 9
YBX3P16989 THOC5-206ENST00000418021 738 ntTSL 313.99□□□□□ -0.172e-8■□□□□ 9
YBX3P16989 TIMM44-211ENST00000600000 556 ntTSL 225.1■■□□□ 1.615e-8■□□□□ 9
YBX3P16989 TIMM44-205ENST00000597926 819 ntTSL 324.28■■□□□ 1.485e-8■□□□□ 9
YBX3P16989 TIMM44-212ENST00000600748 768 ntTSL 1 (best)18.72■□□□□ 0.595e-8■□□□□ 9
YBX3P16989 TTC4-204ENST00000486621 549 ntTSL 27.05□□□□□ -1.282e-8■□□□□ 9
YBX3P16989 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.6■□□□□ 0.577e-8■□□□□ 9
YBX3P16989 SHMT2-217ENST00000555116 1885 ntTSL 218.26■□□□□ 0.517e-8■□□□□ 9
YBX3P16989 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.52■□□□□ 0.47e-8■□□□□ 9
YBX3P16989 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC17.06■□□□□ 0.327e-8■□□□□ 9
YBX3P16989 SHMT2-231ENST00000557433 1904 ntTSL 1 (best)16.53■□□□□ 0.247e-8■□□□□ 9
YBX3P16989 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC14.47□□□□□ -0.097e-8■□□□□ 9
YBX3P16989 SHMT2-229ENST00000557348 1659 ntTSL 214.01□□□□□ -0.177e-8■□□□□ 9
YBX3P16989 SHMT2-226ENST00000556825 2215 ntTSL 1 (best)13.99□□□□□ -0.177e-8■□□□□ 9
YBX3P16989 SHMT2-222ENST00000555774 2311 ntTSL 1 (best)13.74□□□□□ -0.217e-8■□□□□ 9
YBX3P16989 SHMT2-212ENST00000554467 3416 ntTSL 212.86□□□□□ -0.357e-8■□□□□ 9
YBX3P16989 SHMT2-207ENST00000553837 2152 ntTSL 512.64□□□□□ -0.397e-8■□□□□ 9
YBX3P16989 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.477e-8■□□□□ 9
YBX3P16989 MRPL16-204ENST00000534340 574 ntTSL 311.88□□□□□ -0.513e-8■□□□□ 9
YBX3P16989 MRPL16-202ENST00000525470 922 ntTSL 55.58□□□□□ -1.523e-8■□□□□ 9
YBX3P16989 RPL17-216ENST00000582935 469 ntTSL 214.85□□□□□ -0.034e-54■□□□□ 9
YBX3P16989 RPL17-219ENST00000584364 523 ntTSL 26.28□□□□□ -1.44e-54■□□□□ 9
YBX3P16989 MED15-206ENST00000420849 430 ntTSL 322.92■■□□□ 1.265e-12■□□□□ 9
YBX3P16989 MED15-207ENST00000423862 581 ntTSL 322.84■■□□□ 1.255e-12■□□□□ 9
YBX3P16989 MED15-219ENST00000457322 623 ntTSL 421.55■■□□□ 1.045e-12■□□□□ 9
YBX3P16989 MED15-208ENST00000424287 589 ntTSL 421.21■□□□□ 0.995e-12■□□□□ 9
YBX3P16989 MED15-228ENST00000487550 587 ntTSL 321.14■□□□□ 0.975e-12■□□□□ 9
YBX3P16989 MED15-209ENST00000428629 572 ntTSL 410.64□□□□□ -0.715e-12■□□□□ 9
YBX3P16989 AP1M1-214ENST00000591966 542 ntTSL 417.71■□□□□ 0.431e-6■□□□□ 9
YBX3P16989 MMADHC-204ENST00000460311 324 ntTSL 28.48□□□□□ -1.051e-8■□□□□ 9
YBX3P16989 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.932e-76■□□□□ 9
YBX3P16989 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)20.83■□□□□ 0.932e-76■□□□□ 9
YBX3P16989 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC18.16■□□□□ 0.52e-76■□□□□ 9
YBX3P16989 RPL13A-212ENST00000488946 2312 ntTSL 216■□□□□ 0.152e-76■□□□□ 9
YBX3P16989 MRPS5-206ENST00000475895 1672 ntTSL 220.55■□□□□ 0.881e-14■□□□□ 9
YBX3P16989 MRPS5-205ENST00000475040 713 ntTSL 210.4□□□□□ -0.741e-14■□□□□ 9
YBX3P16989 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.72■■■■□ 3.158e-10■□□□□ 9
YBX3P16989 CALM3-202ENST00000391918 702 ntTSL 2 BASIC24.36■■□□□ 1.498e-10■□□□□ 9
YBX3P16989 CALM3-211ENST00000598871 561 ntTSL 4 BASIC24.02■■□□□ 1.448e-10■□□□□ 9
YBX3P16989 CALM3-206ENST00000594523 540 ntTSL 4 BASIC16.74■□□□□ 0.278e-10■□□□□ 9
YBX3P16989 CALM3-213ENST00000602169 590 ntTSL 216.64■□□□□ 0.258e-10■□□□□ 9
YBX3P16989 CALM3-203ENST00000477244 696 ntTSL 315.86■□□□□ 0.138e-10■□□□□ 9
YBX3P16989 CALM3-210ENST00000597868 927 ntTSL 314.34□□□□□ -0.118e-10■□□□□ 9
YBX3P16989 ASH2L-204ENST00000517719 656 ntTSL 324.68■■□□□ 1.542e-8■□□□□ 9
YBX3P16989 PHKB-202ENST00000323584 4283 ntTSL 1 (best) BASIC13.46□□□□□ -0.251e-8■□□□□ 9
YBX3P16989 COPG1-204ENST00000509208 472 ntTSL 213.24□□□□□ -0.295e-13■□□□□ 9
YBX3P16989 PHKB-208ENST00000566044 3829 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.331e-8■□□□□ 9
YBX3P16989 RABGGTB-201ENST00000319942 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.575e-13■□□□□ 9
YBX3P16989 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC7.87□□□□□ -1.151e-8■□□□□ 9
YBX3P16989 RABGGTB-205ENST00000462042 569 ntTSL 37.68□□□□□ -1.185e-13■□□□□ 9
YBX3P16989 RABGGTB-209ENST00000473406 721 ntTSL 57.62□□□□□ -1.195e-13■□□□□ 9
YBX3P16989 RABGGTB-204ENST00000461653 1702 ntTSL 57.61□□□□□ -1.195e-13■□□□□ 9
YBX3P16989 RABGGTB-212ENST00000491266 961 ntTSL 37.43□□□□□ -1.225e-13■□□□□ 9
YBX3P16989 RABGGTB-208ENST00000471759 2137 ntTSL 27.28□□□□□ -1.245e-13■□□□□ 9
YBX3P16989 RABGGTB-210ENST00000485459 788 ntTSL 57.03□□□□□ -1.285e-13■□□□□ 9
YBX3P16989 RABGGTB-207ENST00000470201 848 ntTSL 36.21□□□□□ -1.425e-13■□□□□ 9
YBX3P16989 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC6.02□□□□□ -1.455e-13■□□□□ 9
YBX3P16989 RABGGTB-213ENST00000496055 3863 ntTSL 25.54□□□□□ -1.525e-13■□□□□ 9
Retrieved 100 of 29,075 protein–RNA pairs in 638.6 ms