RNA–Protein interactions for RNA: ENST00000597848.1

CHMP2A-204, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 3

Gene CHMP2A, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-204ENST00000597848 NISCHQ9Y2I1 1504 aa52.5■■■■■ 5.99
CHMP2A-204ENST00000597848 CCDC180Q9P1Z9 1646 aa46.34■■■■■ 5.01
CHMP2A-204ENST00000597848 ABCC9O60706 1549 aa45.02■■■■■ 4.8
CHMP2A-204ENST00000597848 DCAF8L2P0C7V8 631 aa43.92■■■■■ 4.62
CHMP2A-204ENST00000597848 ZCCHC6Q5VYS8 1495 aaKnown RBP43.81■■■■■ 4.6
CHMP2A-204ENST00000597848 NACADO15069 1562 aa43.51■■■■■ 4.56
CHMP2A-204ENST00000597848 RB1CC1Q8TDY2 1594 aa43.45■■■■■ 4.55
CHMP2A-204ENST00000597848 DCAF1Q9Y4B6 1507 aa43.39■■■■■ 4.54
CHMP2A-204ENST00000597848 MYO15BQ96JP2 1530 aa43.37■■■■■ 4.53
CHMP2A-204ENST00000597848 SCRIBQ14160 1630 aa42.44■■■■■ 4.38
CHMP2A-204ENST00000597848 UNC13AQ9UPW8 1703 aa42.36■■■■■ 4.37
CHMP2A-204ENST00000597848 PABPN1Q86U42 306 aaKnown RBP eCLIP42.24■■■■■ 4.35
CHMP2A-204ENST00000597848 BICRAQ9NZM4 1560 aa42.07■■■■■ 4.33
CHMP2A-204ENST00000597848 SHROOM4Q9ULL8 1493 aa41.97■■■■■ 4.31
CHMP2A-204ENST00000597848 EIF4G1Q04637 1599 aaKnown RBP40.95■■■■■ 4.15
CHMP2A-204ENST00000597848 CECR2Q9BXF3 1484 aa40.88■■■■■ 4.13
CHMP2A-204ENST00000597848 DNAJC5BQ9UF47 199 aa40.86■■■■■ 4.13
CHMP2A-204ENST00000597848 CC2D2AQ9P2K1 1620 aa40.67■■■■■ 4.1
CHMP2A-204ENST00000597848 BAZ1AQ9NRL2 1556 aaPredicted RBP40.65■■■■■ 4.1
CHMP2A-204ENST00000597848 SMARCA4P51532 1647 aa40.59■■■■■ 4.09
CHMP2A-204ENST00000597848 MROH2BQ7Z745 1585 aa40.48■■■■■ 4.07
CHMP2A-204ENST00000597848 ATAD2BQ9ULI0 1458 aa40.28■■■■■ 4.04
CHMP2A-204ENST00000597848 SMARCA2P51531 1590 aa40.24■■■■■ 4.03
CHMP2A-204ENST00000597848 RSF1Q96T23 1441 aaPredicted RBP40.24■■■■■ 4.03
CHMP2A-204ENST00000597848 NCAPD3P42695 1498 aa40.17■■■■■ 4.02
CHMP2A-204ENST00000597848 PEG3Q9GZU2 1588 aa40.14■■■■■ 4.02
CHMP2A-204ENST00000597848 WIZO95785 1651 aa40.05■■■■■ 4
CHMP2A-204ENST00000597848 BAZ1BQ9UIG0 1483 aaKnown RBP40■■■■□ 3.99
CHMP2A-204ENST00000597848 HMGXB3Q12766 1538 aa39.97■■■■□ 3.99
CHMP2A-204ENST00000597848 SUPT5HO00267 1087 aaKnown RBP39.8■■■■□ 3.96
CHMP2A-204ENST00000597848 TOP2AP11388 1531 aaKnown RBP39.65■■■■□ 3.94
CHMP2A-204ENST00000597848 CCDC88BA6NC98 1476 aa39.24■■■■□ 3.87
CHMP2A-204ENST00000597848 CADPSQ9ULU8 1353 aa39.08■■■■□ 3.85
CHMP2A-204ENST00000597848 NESP48681 1621 aa39.08■■■■□ 3.85
CHMP2A-204ENST00000597848 LAMC3Q9Y6N6 1575 aa38.99■■■■□ 3.83
CHMP2A-204ENST00000597848 CFTRP13569 1480 aa38.91■■■■□ 3.82
CHMP2A-204ENST00000597848 PDS5BQ9NTI5 1447 aa38.8■■■■□ 3.8
CHMP2A-204ENST00000597848 ERCC6Q03468 1493 aa38.78■■■■□ 3.8
CHMP2A-204ENST00000597848 FANCD2Q9BXW9 1451 aa38.61■■■■□ 3.77
CHMP2A-204ENST00000597848 KIF21AQ7Z4S6 1674 aa38.55■■■■□ 3.76
CHMP2A-204ENST00000597848 PRDM2Q13029 1718 aa38.52■■■■□ 3.76
CHMP2A-204ENST00000597848 CEP164Q9UPV0 1460 aa38.51■■■■□ 3.76
CHMP2A-204ENST00000597848 MRC2Q9UBG0 1479 aa38.34■■■■□ 3.73
CHMP2A-204ENST00000597848 THOC2Q8NI27 1593 aaKnown RBP38.27■■■■□ 3.72
CHMP2A-204ENST00000597848 URB2Q14146 1524 aaKnown RBP38.17■■■■□ 3.7
CHMP2A-204ENST00000597848 WDR62O43379 1518 aa38.13■■■■□ 3.69
CHMP2A-204ENST00000597848 CUX2O14529 1486 aa38.08■■■■□ 3.69
CHMP2A-204ENST00000597848 ABCC8Q09428 1581 aa38.06■■■■□ 3.68
CHMP2A-204ENST00000597848 TOPBP1Q92547 1522 aa38.04■■■■□ 3.68
CHMP2A-204ENST00000597848 DNMBPQ6XZF7 1577 aa38.02■■■■□ 3.68
CHMP2A-204ENST00000597848 WRNQ14191 1432 aaPredicted RBP eCLIP37.95■■■■□ 3.67
CHMP2A-204ENST00000597848 CUX1P39880 1505 aa37.94■■■■□ 3.66
CHMP2A-204ENST00000597848 FGD5Q6ZNL6 1462 aa37.76■■■■□ 3.63
CHMP2A-204ENST00000597848 SYNJ1O43426 1573 aa37.76■■■■□ 3.63
CHMP2A-204ENST00000597848 POLA1P09884 1462 aaPredicted RBP37.75■■■■□ 3.63
CHMP2A-204ENST00000597848 TOP2BQ02880 1626 aa37.72■■■■□ 3.63
CHMP2A-204ENST00000597848 IFT140Q96RY7 1462 aa37.68■■■■□ 3.62
CHMP2A-204ENST00000597848 SOGA1O94964 1423 aa37.68■■■■□ 3.62
CHMP2A-204ENST00000597848 BIVM-ERCC5R4GMW8 1640 aa37.68■■■■□ 3.62
CHMP2A-204ENST00000597848 RAD54L2Q9Y4B4 1467 aa37.63■■■■□ 3.61
CHMP2A-204ENST00000597848 TRIM41Q8WV44 630 aa37.54■■■■□ 3.6
CHMP2A-204ENST00000597848 TARBP1Q13395 1621 aaKnown RBP37.52■■■■□ 3.6
CHMP2A-204ENST00000597848 ZNF608Q9ULD9 1512 aaPredicted RBP37.47■■■■□ 3.59
CHMP2A-204ENST00000597848 TDRD9Q8NDG6 1382 aaKnown RBP37.42■■■■□ 3.58
CHMP2A-204ENST00000597848 CHIC1Q5VXU3 224 aa37.39■■■■□ 3.58
CHMP2A-204ENST00000597848 ABCA10Q8WWZ4 1543 aa37.39■■■■□ 3.58
CHMP2A-204ENST00000597848 AQRO60306 1485 aaKnown RBP eCLIP37.38■■■■□ 3.577e-6■■□□□ 12.2
CHMP2A-204ENST00000597848 EIF4G3O43432 1585 aaKnown RBP37.29■■■■□ 3.56
CHMP2A-204ENST00000597848 WDR97A6NE52 1622 aa37.28■■■■□ 3.56
CHMP2A-204ENST00000597848 GAPVD1Q14C86 1478 aa37.21■■■■□ 3.55
CHMP2A-204ENST00000597848 ABCA5Q8WWZ7 1642 aa37.14■■■■□ 3.54
CHMP2A-204ENST00000597848 GRIN2BQ13224 1484 aa37.13■■■■□ 3.53
CHMP2A-204ENST00000597848 KIF27Q86VH2 1401 aa37.12■■■■□ 3.53
CHMP2A-204ENST00000597848 SNAPC4Q5SXM2 1469 aa37.01■■■■□ 3.51
CHMP2A-204ENST00000597848 PBRM1Q86U86 1689 aa36.99■■■■□ 3.51
CHMP2A-204ENST00000597848 FBLN2P98095 1184 aa36.95■■■■□ 3.51
CHMP2A-204ENST00000597848 RUSC2Q8N2Y8 1516 aa36.95■■■■□ 3.5
CHMP2A-204ENST00000597848 MAGI1Q96QZ7 1491 aaPredicted RBP36.94■■■■□ 3.5
CHMP2A-204ENST00000597848 ERICH3Q5RHP9 1530 aa36.93■■■■□ 3.5
CHMP2A-204ENST00000597848 IGF1RP08069 1367 aa36.91■■■■□ 3.5
CHMP2A-204ENST00000597848 CHMP7Q8WUX9 453 aaPredicted RBP36.88■■■■□ 3.49
CHMP2A-204ENST00000597848 SYNJ2O15056 1496 aa36.81■■■■□ 3.48
CHMP2A-204ENST00000597848 FHAD1B1AJZ9 1412 aa36.8■■■■□ 3.48
CHMP2A-204ENST00000597848 FAM9AQ8IZU1 332 aaPredicted RBP36.8■■■■□ 3.48
CHMP2A-204ENST00000597848 ADAMTS12P58397 1594 aa36.77■■■■□ 3.48
CHMP2A-204ENST00000597848 OSCARQ8IYS5 282 aa36.74■■■■□ 3.47
CHMP2A-204ENST00000597848 EEA1Q15075 1411 aa36.74■■■■□ 3.47
CHMP2A-204ENST00000597848 CARMIL1Q5VZK9 1371 aa36.72■■■■□ 3.47
CHMP2A-204ENST00000597848 CSRNP3Q8WYN3 585 aa36.71■■■■□ 3.47
CHMP2A-204ENST00000597848 CHD1O14646 1710 aa36.71■■■■□ 3.47
CHMP2A-204ENST00000597848 CUL7Q14999 1698 aa36.67■■■■□ 3.46
CHMP2A-204ENST00000597848 GRIN2AQ12879 1464 aa36.63■■■■□ 3.45
CHMP2A-204ENST00000597848 RAPGEF2Q9Y4G8 1499 aa36.53■■■■□ 3.44
CHMP2A-204ENST00000597848 PRXQ9BXM0 1461 aa36.5■■■■□ 3.43
CHMP2A-204ENST00000597848 NUP160Q12769 1436 aa36.42■■■■□ 3.42
CHMP2A-204ENST00000597848 CEP170Q5SW79 1584 aa36.4■■■■□ 3.42
CHMP2A-204ENST00000597848 DNAJC5Q9H3Z4 198 aa36.39■■■■□ 3.42
CHMP2A-204ENST00000597848 EHMT2Q96KQ7 1210 aa36.33■■■■□ 3.41
CHMP2A-204ENST00000597848 CLASP1Q7Z460 1538 aa36.32■■■■□ 3.4
CHMP2A-204ENST00000597848 KIF21BO75037 1637 aa36.26■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms