Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LDLRP01130 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LDLRP01130 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LDLRP01130 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LDLRP01130 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LDLRP01130 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
LDLRP01130 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.84■■□□□ 1.09
LDLRP01130 MIR638-201ENST00000385237 100 ntBASIC21.84■■□□□ 1.09
LDLRP01130 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
LDLRP01130 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.84■■□□□ 1.09
LDLRP01130 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.84■■□□□ 1.09
LDLRP01130 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LDLRP01130 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LDLRP01130 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LDLRP01130 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LDLRP01130 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
LDLRP01130 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
LDLRP01130 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.83■■□□□ 1.09
LDLRP01130 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
LDLRP01130 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.83■■□□□ 1.09
LDLRP01130 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LDLRP01130 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LDLRP01130 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.82■■□□□ 1.08
LDLRP01130 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
LDLRP01130 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LDLRP01130 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.82■■□□□ 1.08
LDLRP01130 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.82■■□□□ 1.08
LDLRP01130 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LDLRP01130 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.82■■□□□ 1.08
LDLRP01130 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.82■■□□□ 1.08
LDLRP01130 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LDLRP01130 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LDLRP01130 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.81■■□□□ 1.08
LDLRP01130 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LDLRP01130 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
LDLRP01130 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.81■■□□□ 1.08
LDLRP01130 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LDLRP01130 AL117328.2-201ENST00000624617 1940 ntBASIC21.8■■□□□ 1.08
LDLRP01130 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
LDLRP01130 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LDLRP01130 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.8■■□□□ 1.08
LDLRP01130 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
LDLRP01130 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDLRP01130 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.79■■□□□ 1.08
LDLRP01130 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.79■■□□□ 1.08
LDLRP01130 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.79■■□□□ 1.08
LDLRP01130 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LDLRP01130 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.79■■□□□ 1.08
LDLRP01130 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
LDLRP01130 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LDLRP01130 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.78■■□□□ 1.08
LDLRP01130 AC087393.1-201ENST00000582896 145 ntBASIC21.78■■□□□ 1.08
LDLRP01130 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.78■■□□□ 1.08
LDLRP01130 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDLRP01130 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
LDLRP01130 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDLRP01130 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDLRP01130 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDLRP01130 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.77■■□□□ 1.08
LDLRP01130 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LDLRP01130 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LDLRP01130 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LDLRP01130 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.77■■□□□ 1.08
LDLRP01130 KRT125P-201ENST00000546827 989 ntBASIC21.77■■□□□ 1.08
LDLRP01130 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LDLRP01130 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDLRP01130 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LDLRP01130 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDLRP01130 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDLRP01130 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.76■■□□□ 1.07
LDLRP01130 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
LDLRP01130 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.76■■□□□ 1.07
LDLRP01130 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.76■■□□□ 1.07
LDLRP01130 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LDLRP01130 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDLRP01130 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.76■■□□□ 1.07
LDLRP01130 MIR4787-201ENST00000607364 84 ntBASIC21.76■■□□□ 1.07
LDLRP01130 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
LDLRP01130 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.76■■□□□ 1.07
LDLRP01130 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDLRP01130 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
LDLRP01130 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDLRP01130 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms