Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHKB-CPT1BH3BT56 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHKB-CPT1BH3BT56 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LINC00567-201ENST00000569854 3409 ntBASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 SYNJ1-203ENST00000382499 7094 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 PM20D1-201ENST00000367136 2152 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 ZIC3-201ENST00000287538 3469 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AL136295.5-201ENST00000558468 4798 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LINC00894-206ENST00000450989 2361 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CD9-202ENST00000382515 1229 ntTSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AC007663.1-201ENST00000438948 1240 ntBASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 S100A2-206ENST00000497140 697 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AL160237.2-201ENST00000556165 472 ntBASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 DERL3-203ENST00000404056 3113 ntTSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 GDPD5-202ENST00000443276 3106 ntTSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 STK33-217ENST00000534493 1895 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 VPS33A-201ENST00000267199 4586 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 POLA2-201ENST00000265465 3744 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 LRRC32-203ENST00000407242 4311 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 TBC1D15-217ENST00000550746 6184 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 SLC13A2-202ENST00000444914 2855 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 BCDIN3D-AS1-201ENST00000548872 3078 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 ITGAL-202ENST00000358164 4673 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 CLCN6-202ENST00000346436 5583 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AC055811.4-201ENST00000624039 1754 ntBASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 DIP2C-201ENST00000280886 7888 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC8.1□□□□□ -1.11
CHKB-CPT1BH3BT56 SLC45A3-201ENST00000367145 3341 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 AC087164.2-201ENST00000624514 3130 ntBASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 G2E3-202ENST00000438909 2334 ntTSL 2 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 ALOXE3-201ENST00000318227 3053 ntTSL 2 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 TXLNG-202ENST00000398155 3998 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 P4HA1-201ENST00000263556 2844 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 P4HA1-204ENST00000394890 2844 ntAPPRIS ALT1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 CARF-213ENST00000438828 3574 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 RBMXL1-202ENST00000399794 5084 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC8.09□□□□□ -1.11
CHKB-CPT1BH3BT56 PRIMA1-202ENST00000393140 3711 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms