RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 DCAF8L2P0C7V8 631 aa19.36■□□□□ 0.69
CLCN6-202ENST00000346436 NISCHQ9Y2I1 1504 aa19.25■□□□□ 0.67
CLCN6-202ENST00000346436 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
CLCN6-202ENST00000346436 SHROOM4Q9ULL8 1493 aa18.22■□□□□ 0.51
CLCN6-202ENST00000346436 FAM9AQ8IZU1 332 aaPredicted RBP17.88■□□□□ 0.45
CLCN6-202ENST00000346436 EHMT2Q96KQ7 1210 aa17.49■□□□□ 0.39
CLCN6-202ENST00000346436 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
CLCN6-202ENST00000346436 APLP2Q06481 763 aa17.24■□□□□ 0.35
CLCN6-202ENST00000346436 TTBK1Q5TCY1 1321 aaPredicted RBP16.9■□□□□ 0.3
CLCN6-202ENST00000346436 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
CLCN6-202ENST00000346436 TRIM41Q8WV44 630 aa16.77■□□□□ 0.27
CLCN6-202ENST00000346436 LOC105371045A0A1W2PR82 267 aa16.76■□□□□ 0.27
CLCN6-202ENST00000346436 HRCP23327 699 aa16.71■□□□□ 0.26
CLCN6-202ENST00000346436 ATP1B4Q9UN42 357 aaPredicted RBP16.7■□□□□ 0.26
CLCN6-202ENST00000346436 PPARGC1BQ86YN6 1023 aaKnown RBP16.68■□□□□ 0.26
CLCN6-202ENST00000346436 MYT1LQ9UL68 1186 aa16.59■□□□□ 0.25
CLCN6-202ENST00000346436 RANGAP1P46060 587 aaPredicted RBP16.52■□□□□ 0.23
CLCN6-202ENST00000346436 CCER1Q8TC90 406 aaPredicted RBP16.5■□□□□ 0.23
CLCN6-202ENST00000346436 TRIM26Q12899 539 aaPredicted RBP16.49■□□□□ 0.23
CLCN6-202ENST00000346436 ZEB1P37275 1124 aaPredicted RBP16.45■□□□□ 0.22
CLCN6-202ENST00000346436 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
CLCN6-202ENST00000346436 HNRNPUL2Q1KMD3 747 aaKnown RBP16.4■□□□□ 0.22
CLCN6-202ENST00000346436 UBTFP17480 764 aaKnown RBP16.37■□□□□ 0.21
CLCN6-202ENST00000346436 PELP1Q8IZL8 1130 aaKnown RBP16.36■□□□□ 0.21
CLCN6-202ENST00000346436 YTHDC1Q96MU7 727 aaKnown RBP16.24■□□□□ 0.19
CLCN6-202ENST00000346436 ABCC9O60706 1549 aa16.24■□□□□ 0.19
CLCN6-202ENST00000346436 CENPBP07199 599 aaPredicted RBP16.2■□□□□ 0.18
CLCN6-202ENST00000346436 MYO15BQ96JP2 1530 aa16.08■□□□□ 0.17
CLCN6-202ENST00000346436 ZCCHC6Q5VYS8 1495 aaKnown RBP16.08■□□□□ 0.17
CLCN6-202ENST00000346436 PABPN1Q86U42 306 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLCN6-202ENST00000346436 FBLN2P98095 1184 aa15.96■□□□□ 0.15
CLCN6-202ENST00000346436 ITGAEP38570 1179 aa15.88■□□□□ 0.13
CLCN6-202ENST00000346436 DIEXFQ68CQ4 756 aaKnown RBP15.86■□□□□ 0.13
CLCN6-202ENST00000346436 NPM1P06748 294 aaKnown RBP eCLIP15.81■□□□□ 0.12
CLCN6-202ENST00000346436 ESF1Q9H501 851 aaKnown RBP15.81■□□□□ 0.12
CLCN6-202ENST00000346436 SCRIBQ14160 1630 aa15.79■□□□□ 0.12
CLCN6-202ENST00000346436 DCAF1Q9Y4B6 1507 aa15.77■□□□□ 0.12
CLCN6-202ENST00000346436 SLC4A1APQ9BWU0 796 aaKnown RBP15.73■□□□□ 0.11
CLCN6-202ENST00000346436 CCDC180Q9P1Z9 1646 aa15.71■□□□□ 0.11
CLCN6-202ENST00000346436 GTF3C3Q9Y5Q9 886 aa15.69■□□□□ 0.1
CLCN6-202ENST00000346436 BCANQ96GW7 911 aa15.67■□□□□ 0.1
CLCN6-202ENST00000346436 POLR3GLQ9BT43 218 aa15.62■□□□□ 0.09
CLCN6-202ENST00000346436 NEFLP07196 543 aa15.55■□□□□ 0.08
CLCN6-202ENST00000346436 ACIN1Q9UKV3 1341 aaKnown RBP15.54■□□□□ 0.08
CLCN6-202ENST00000346436 CSRNP3Q8WYN3 585 aa15.52■□□□□ 0.08
CLCN6-202ENST00000346436 CDK11AQ9UQ88 783 aaPredicted RBP15.52■□□□□ 0.07
CLCN6-202ENST00000346436 RSF1Q96T23 1441 aaPredicted RBP15.51■□□□□ 0.07
CLCN6-202ENST00000346436 ZNF316A6NFI3 1004 aaPredicted RBP15.51■□□□□ 0.07
CLCN6-202ENST00000346436 ERICH6Q7L0X2 663 aa15.5■□□□□ 0.07
CLCN6-202ENST00000346436 SCAF1Q9H7N4 1312 aaKnown RBP15.49■□□□□ 0.07
CLCN6-202ENST00000346436 CNGB1Q14028 1251 aaPredicted RBP15.45■□□□□ 0.06
CLCN6-202ENST00000346436 NEUROD1Q13562 356 aa15.44■□□□□ 0.06
CLCN6-202ENST00000346436 FAM50AQ14320 339 aaKnown RBP15.44■□□□□ 0.06
CLCN6-202ENST00000346436 TRIM52Q96A61 297 aa15.44■□□□□ 0.06
CLCN6-202ENST00000346436 STAG3Q9UJ98 1225 aa15.43■□□□□ 0.06
CLCN6-202ENST00000346436 PLPPR3Q6T4P5 718 aa15.36■□□□□ 0.05
CLCN6-202ENST00000346436 MYT1Q01538 1121 aa15.34■□□□□ 0.05
CLCN6-202ENST00000346436 NEFMP07197 916 aa15.32■□□□□ 0.04
CLCN6-202ENST00000346436 P3H3Q8IVL6 736 aa15.31■□□□□ 0.04
CLCN6-202ENST00000346436 CHMP7Q8WUX9 453 aaPredicted RBP15.28■□□□□ 0.04
CLCN6-202ENST00000346436 CECR2Q9BXF3 1484 aa15.26■□□□□ 0.03
CLCN6-202ENST00000346436 SLC24A1O60721 1099 aa15.25■□□□□ 0.03
CLCN6-202ENST00000346436 ZNF777Q9ULD5 760 aaPredicted RBP15.24■□□□□ 0.03
CLCN6-202ENST00000346436 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
CLCN6-202ENST00000346436 MIER1Q8N108 512 aa15.23■□□□□ 0.03
CLCN6-202ENST00000346436 DAXXQ9UER7 740 aaPredicted RBP15.21■□□□□ 0.02
CLCN6-202ENST00000346436 CEP162Q5TB80 1403 aa15.2■□□□□ 0.02
CLCN6-202ENST00000346436 ARID3CA6NKF2 412 aa15.19■□□□□ 0.02
CLCN6-202ENST00000346436 ZBTB47Q9UFB7 747 aaPredicted RBP15.18■□□□□ 0.02
CLCN6-202ENST00000346436 ERCC6Q03468 1493 aa15.17■□□□□ 0.02
CLCN6-202ENST00000346436 TRHP20396 242 aaPredicted RBP15.16■□□□□ 0.02
CLCN6-202ENST00000346436 CHGAP10645 457 aaKnown RBP15.15■□□□□ 0.02
CLCN6-202ENST00000346436 ZNF326Q5BKZ1 582 aaKnown RBP15.14■□□□□ 0.01
CLCN6-202ENST00000346436 CLIP1P30622 1438 aa15.1■□□□□ 0.01
CLCN6-202ENST00000346436 ARID4BQ4LE39 1312 aaPredicted RBP15.1■□□□□ 0.01
CLCN6-202ENST00000346436 ANP32CO43423 234 aa15.09■□□□□ 0.01
CLCN6-202ENST00000346436 MROH2BQ7Z745 1585 aa15.07■□□□□ 0
CLCN6-202ENST00000346436 SOGA1O94964 1423 aa15.07■□□□□ 0
CLCN6-202ENST00000346436 DDX10Q13206 875 aaKnown RBP15.06■□□□□ 0
CLCN6-202ENST00000346436 HIRIP3Q9BW71 556 aaPredicted RBP15.05■□□□□ -0
CLCN6-202ENST00000346436 C14orf37Q86TY3 774 aa15.04■□□□□ -0
CLCN6-202ENST00000346436 ABCC8Q09428 1581 aa15.03■□□□□ -0
CLCN6-202ENST00000346436 GOLGA3Q08378 1498 aa15.02■□□□□ -0
CLCN6-202ENST00000346436 TNIKQ9UKE5 1360 aa15.01□□□□□ -0.01
CLCN6-202ENST00000346436 CLSPNQ9HAW4 1339 aa15.01□□□□□ -0.01
CLCN6-202ENST00000346436 FKBP8Q14318 412 aa15.01□□□□□ -0.01
CLCN6-202ENST00000346436 NACADO15069 1562 aa15□□□□□ -0.01
CLCN6-202ENST00000346436 NPM2Q86SE8 214 aaKnown RBP15□□□□□ -0.01
CLCN6-202ENST00000346436 WRNQ14191 1432 aaPredicted RBP eCLIP15□□□□□ -0.015e-6■■■■■ 46
CLCN6-202ENST00000346436 TSPY4P0CV99 314 aa14.99□□□□□ -0.01
CLCN6-202ENST00000346436 TSPY10P0CW01 314 aa14.99□□□□□ -0.01
CLCN6-202ENST00000346436 PPP1R15AO75807 674 aaPredicted RBP14.98□□□□□ -0.01
CLCN6-202ENST00000346436 HAP1P54257 671 aaPredicted RBP14.98□□□□□ -0.01
CLCN6-202ENST00000346436 CCDC88BA6NC98 1476 aa14.97□□□□□ -0.01
CLCN6-202ENST00000346436 WIZO95785 1651 aa14.95□□□□□ -0.02
CLCN6-202ENST00000346436 A0A0G2JS52 829 aa14.93□□□□□ -0.02
CLCN6-202ENST00000346436 BAZ1AQ9NRL2 1556 aaPredicted RBP14.92□□□□□ -0.02
CLCN6-202ENST00000346436 EEA1Q15075 1411 aa14.91□□□□□ -0.02
CLCN6-202ENST00000346436 PLEKHD1A6NEE1 506 aa14.89□□□□□ -0.03
CLCN6-202ENST00000346436 KCNH8Q96L42 1107 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms