Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FIP1L1-205ENST00000505125 3180 ntTSL 1 (best)14.2□□□□□ -0.149e-7■□□□□ 9
YBX3P16989 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.161e-11■□□□□ 9
YBX3P16989 MIR4435-2HG-216ENST00000603827 1587 nt13.99□□□□□ -0.171e-8■□□□□ 9
YBX3P16989 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.191e-11■□□□□ 9
YBX3P16989 RBM8A-205ENST00000632040 495 ntTSL 213.74□□□□□ -0.219e-7■□□□□ 9
YBX3P16989 LINC00958-201ENST00000504230 1558 ntTSL 2 BASIC13.33□□□□□ -0.286e-9■□□□□ 9
YBX3P16989 YY1AP1-204ENST00000354691 2498 ntTSL 213.01□□□□□ -0.331e-11■□□□□ 9
YBX3P16989 YY1AP1-202ENST00000311573 2682 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.331e-11■□□□□ 9
YBX3P16989 RBM8A-204ENST00000583313 4961 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.359e-7■□□□□ 9
YBX3P16989 YY1AP1-209ENST00000368330 2555 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.371e-11■□□□□ 9
YBX3P16989 LINC00958-203ENST00000527945 1121 ntTSL 2 BASIC12.11□□□□□ -0.476e-9■□□□□ 9
YBX3P16989 MIR4435-2HG-217ENST00000604981 759 ntTSL 1 (best) BASIC11.82□□□□□ -0.521e-8■□□□□ 9
YBX3P16989 IGF2BP2-210ENST00000494906 918 ntTSL 511.35□□□□□ -0.598e-7■□□□□ 9
YBX3P16989 POLDIP3-203ENST00000348657 3323 ntTSL 1 (best) BASIC11.3□□□□□ -0.69e-7■□□□□ 9
YBX3P16989 POLDIP3-201ENST00000252115 3441 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.69e-7■□□□□ 9
YBX3P16989 POLDIP3-205ENST00000451060 3491 ntTSL 2 BASIC11.2□□□□□ -0.629e-7■□□□□ 9
YBX3P16989 LINC00958-206ENST00000532541 1124 ntTSL 311□□□□□ -0.656e-9■□□□□ 9
YBX3P16989 LINC00958-207ENST00000534477 888 ntTSL 311□□□□□ -0.656e-9■□□□□ 9
YBX3P16989 POLDIP3-204ENST00000445215 3337 ntTSL 1 (best)10.69□□□□□ -0.79e-7■□□□□ 9
YBX3P16989 MIR4435-2HG-205ENST00000431385 843 ntTSL 3 BASIC10.68□□□□□ -0.71e-8■□□□□ 9
YBX3P16989 MIR4435-2HG-210ENST00000442293 546 ntTSL 510.64□□□□□ -0.711e-8■□□□□ 9
YBX3P16989 LINC00958-202ENST00000526388 607 ntTSL 2 BASIC10.63□□□□□ -0.716e-9■□□□□ 9
YBX3P16989 DRAM2-210ENST00000496430 767 ntTSL 510.51□□□□□ -0.731e-8■□□□□ 9
YBX3P16989 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC10.41□□□□□ -0.741e-8■□□□□ 9
YBX3P16989 MIR4435-2HG-215ENST00000603310 413 ntTSL 1 (best)10.41□□□□□ -0.741e-8■□□□□ 9
YBX3P16989 MIR4435-2HG-211ENST00000443467 826 ntTSL 3 BASIC10.3□□□□□ -0.761e-8■□□□□ 9
YBX3P16989 YY1AP1-203ENST00000347088 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.821e-11■□□□□ 9
YBX3P16989 YY1AP1-215ENST00000436865 2684 ntTSL 1 (best)8.94□□□□□ -0.981e-11■□□□□ 9
YBX3P16989 RBM8A-207ENST00000633781 440 ntTSL 28.83□□□□□ -19e-7■□□□□ 9
YBX3P16989 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC8.35□□□□□ -1.071e-8■□□□□ 9
YBX3P16989 YY1AP1-225ENST00000496324 714 ntTSL 57.85□□□□□ -1.151e-11■□□□□ 9
YBX3P16989 FIP1L1-211ENST00000513008 1070 ntTSL 1 (best)7.53□□□□□ -1.29e-7■□□□□ 9
YBX3P16989 DRAM2-207ENST00000480600 533 ntTSL 57.26□□□□□ -1.251e-8■□□□□ 9
YBX3P16989 FIP1L1-213ENST00000514543 1465 ntTSL 57.14□□□□□ -1.279e-7■□□□□ 9
YBX3P16989 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.08□□□□□ -1.281e-8■□□□□ 9
YBX3P16989 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC6.92□□□□□ -1.31e-8■□□□□ 9
YBX3P16989 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.82□□□□□ -1.321e-8■□□□□ 9
YBX3P16989 PRPF38A-203ENST00000487160 926 ntTSL 26.79□□□□□ -1.329e-7■□□□□ 9
YBX3P16989 DRAM2-202ENST00000461449 611 ntTSL 36.55□□□□□ -1.361e-8■□□□□ 9
YBX3P16989 SIKE1-202ENST00000369524 455 ntTSL 36.15□□□□□ -1.429e-7■□□□□ 9
YBX3P16989 PDCD6IP-202ENST00000412887 842 ntTSL 35.85□□□□□ -1.479e-7■□□□□ 9
YBX3P16989 LINC00958-205ENST00000531402 590 ntTSL 45.78□□□□□ -1.486e-9■□□□□ 9
YBX3P16989 YY1AP1-224ENST00000493625 958 ntTSL 54.98□□□□□ -1.611e-11■□□□□ 9
YBX3P16989 YY1AP1-219ENST00000466366 374 ntTSL 54.25□□□□□ -1.731e-11■□□□□ 9
YBX3P16989 CERS2-212ENST00000559660 242 ntTSL 53.98□□□□□ -1.776e-9■□□□□ 9
YBX3P16989 HIST1H2BJ-203ENST00000607124 950 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.047e-22■□□□□ 9
YBX3P16989 RPL13A-208ENST00000477613 796 ntTSL 523.06■■□□□ 1.281e-323■□□□□ 9
YBX3P16989 RPL13A-211ENST00000486930 652 ntTSL 320.96■□□□□ 0.951e-323■□□□□ 9
YBX3P16989 RPL13A-206ENST00000476268 1623 ntTSL 320.54■□□□□ 0.881e-323■□□□□ 9
YBX3P16989 RPL13A-209ENST00000479992 850 ntTSL 320.53■□□□□ 0.881e-323■□□□□ 9
YBX3P16989 RPL13A-202ENST00000467825 660 ntTSL 520.16■□□□□ 0.821e-323■□□□□ 9
YBX3P16989 RPL13A-204ENST00000472481 728 ntTSL 219.47■□□□□ 0.711e-323■□□□□ 9
YBX3P16989 RPL13A-210ENST00000484279 794 ntTSL 518.16■□□□□ 0.51e-323■□□□□ 9
YBX3P16989 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20■□□□□ 0.795e-19■□□□□ 9
YBX3P16989 PTBP3-201ENST00000210227 734 ntTSL 227.1■■□□□ 1.934e-7■□□□□ 9
YBX3P16989 PTBP3-208ENST00000487997 389 ntTSL 312.18□□□□□ -0.464e-7■□□□□ 9
YBX3P16989 CYFIP1-212ENST00000621036 585 ntTSL 313.66□□□□□ -0.222e-8■□□□□ 9
YBX3P16989 EBPL-203ENST00000378270 579 ntTSL 2 BASIC36.4■■■■□ 3.421e-6■□□□□ 9
YBX3P16989 EBPL-206ENST00000473576 810 ntTSL 233.79■■■■□ 31e-6■□□□□ 9
YBX3P16989 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.991e-6■□□□□ 9
YBX3P16989 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.91■■■□□ 2.541e-6■□□□□ 9
YBX3P16989 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.57■■■□□ 2.481e-6■□□□□ 9
YBX3P16989 EBPL-207ENST00000495963 1026 ntTSL 1 (best)30.57■■■□□ 2.481e-6■□□□□ 9
YBX3P16989 CCNDBP1-208ENST00000566515 1634 ntTSL 526.66■■□□□ 1.861e-6■□□□□ 9
YBX3P16989 CCNDBP1-205ENST00000564630 2079 ntTSL 523.39■■□□□ 1.341e-6■□□□□ 9
YBX3P16989 CCNDBP1-211ENST00000567434 713 ntTSL 322.55■■□□□ 1.21e-6■□□□□ 9
YBX3P16989 CCNDBP1-204ENST00000563065 1450 ntTSL 222.26■■□□□ 1.151e-6■□□□□ 9
YBX3P16989 CCNDBP1-215ENST00000569745 1356 ntTSL 521.64■■□□□ 1.061e-6■□□□□ 9
YBX3P16989 CCNDBP1-213ENST00000568507 1385 ntTSL 220.13■□□□□ 0.811e-6■□□□□ 9
YBX3P16989 CCNDBP1-203ENST00000562553 736 ntTSL 220.13■□□□□ 0.811e-6■□□□□ 9
YBX3P16989 CCNDBP1-206ENST00000565296 1831 ntTSL 217.47■□□□□ 0.391e-6■□□□□ 9
YBX3P16989 CCNDBP1-209ENST00000566833 577 ntTSL 216.8■□□□□ 0.281e-6■□□□□ 9
YBX3P16989 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.071e-6■□□□□ 9
YBX3P16989 CCNDBP1-214ENST00000568936 2088 ntTSL 213.52□□□□□ -0.251e-6■□□□□ 9
YBX3P16989 CCNDBP1-210ENST00000566882 2746 ntTSL 211.09□□□□□ -0.631e-6■□□□□ 9
YBX3P16989 CCNDBP1-202ENST00000444658 1479 ntTSL 210.63□□□□□ -0.711e-6■□□□□ 9
YBX3P16989 CCNDBP1-212ENST00000567690 936 ntTSL 59.75□□□□□ -0.851e-6■□□□□ 9
YBX3P16989 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.79■■■□□ 2.28e-7■□□□□ 9
YBX3P16989 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.778e-7■□□□□ 9
YBX3P16989 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC22.43■■□□□ 1.188e-7■□□□□ 9
YBX3P16989 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC20.25■□□□□ 0.838e-7■□□□□ 9
YBX3P16989 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC17.48■□□□□ 0.398e-7■□□□□ 9
YBX3P16989 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.238e-7■□□□□ 9
YBX3P16989 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.024e-7■□□□□ 9
YBX3P16989 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.374e-7■□□□□ 9
YBX3P16989 CUTA-206ENST00000465956 961 ntTSL 215.7■□□□□ 0.14e-7■□□□□ 9
YBX3P16989 CUTA-211ENST00000488478 676 ntTSL 5 BASIC13.51□□□□□ -0.254e-7■□□□□ 9
YBX3P16989 CUTA-207ENST00000479249 562 ntTSL 312.04□□□□□ -0.484e-7■□□□□ 9
YBX3P16989 CUTA-205ENST00000462802 1054 ntTSL 1 (best)11.85□□□□□ -0.514e-7■□□□□ 9
YBX3P16989 CUTA-214ENST00000607266 661 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.554e-7■□□□□ 9
YBX3P16989 CUTA-213ENST00000494751 731 ntTSL 5 BASIC11.52□□□□□ -0.574e-7■□□□□ 9
YBX3P16989 CPSF1-201ENST00000526271 697 ntTSL 320.1■□□□□ 0.812e-11■□□□□ 9
YBX3P16989 CPSF1-210ENST00000532935 506 ntTSL 520.1■□□□□ 0.812e-11■□□□□ 9
YBX3P16989 DLK1-204ENST00000555747 538 ntTSL 429.3■■■□□ 2.281e-8■□□□□ 9
YBX3P16989 STT3A-209ENST00000527456 481 ntTSL 54.7□□□□□ -1.662e-11■□□□□ 9
YBX3P16989 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC8.02□□□□□ -1.131e-6■□□□□ 9
YBX3P16989 RCC1-209ENST00000430407 1121 ntTSL 523.94■■□□□ 1.428e-7■□□□□ 9
YBX3P16989 RCC1-205ENST00000411533 1169 ntTSL 518.04■□□□□ 0.488e-7■□□□□ 9
YBX3P16989 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC18.03■□□□□ 0.488e-7■□□□□ 9
YBX3P16989 RCC1-207ENST00000427469 903 ntTSL 517.58■□□□□ 0.48e-7■□□□□ 9
Retrieved 100 of 29,075 protein–RNA pairs in 111.9 ms