RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 NISCHQ9Y2I1 1504 aa37.65■■■■□ 3.62
CPSF1-210ENST00000532935 CCDC180Q9P1Z9 1646 aa33.59■■■□□ 2.97
CPSF1-210ENST00000532935 ABCC9O60706 1549 aa32.92■■■□□ 2.86
CPSF1-210ENST00000532935 RB1CC1Q8TDY2 1594 aa31.64■■■□□ 2.66
CPSF1-210ENST00000532935 NACADO15069 1562 aa31.56■■■□□ 2.64
CPSF1-210ENST00000532935 DCAF8L2P0C7V8 631 aa31.45■■■□□ 2.63
CPSF1-210ENST00000532935 ZCCHC6Q5VYS8 1495 aaKnown RBP31.33■■■□□ 2.61
CPSF1-210ENST00000532935 MYO15BQ96JP2 1530 aa31.32■■■□□ 2.6
CPSF1-210ENST00000532935 DCAF1Q9Y4B6 1507 aa31.14■■■□□ 2.58
CPSF1-210ENST00000532935 UNC13AQ9UPW8 1703 aa31.03■■■□□ 2.56
CPSF1-210ENST00000532935 PABPN1Q86U42 306 aaKnown RBP eCLIP30.71■■■□□ 2.517e-8■■■■■ 28.3
CPSF1-210ENST00000532935 BICRAQ9NZM4 1560 aa30.7■■■□□ 2.5
CPSF1-210ENST00000532935 SCRIBQ14160 1630 aa30.62■■■□□ 2.49
CPSF1-210ENST00000532935 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
CPSF1-210ENST00000532935 DNAJC5BQ9UF47 199 aa30.31■■■□□ 2.44
CPSF1-210ENST00000532935 EIF4G1Q04637 1599 aaKnown RBP29.89■■■□□ 2.38
CPSF1-210ENST00000532935 CC2D2AQ9P2K1 1620 aa29.82■■■□□ 2.36
CPSF1-210ENST00000532935 CECR2Q9BXF3 1484 aa29.6■■■□□ 2.33
CPSF1-210ENST00000532935 SMARCA4P51532 1647 aa29.27■■■□□ 2.28
CPSF1-210ENST00000532935 BAZ1AQ9NRL2 1556 aaPredicted RBP29.19■■■□□ 2.26
CPSF1-210ENST00000532935 NCAPD3P42695 1498 aa29.1■■■□□ 2.25
CPSF1-210ENST00000532935 ATAD2BQ9ULI0 1458 aa29.1■■■□□ 2.25
CPSF1-210ENST00000532935 SMARCA2P51531 1590 aa29.09■■■□□ 2.25
CPSF1-210ENST00000532935 MROH2BQ7Z745 1585 aa29.01■■■□□ 2.24
CPSF1-210ENST00000532935 HMGXB3Q12766 1538 aa28.98■■■□□ 2.23
CPSF1-210ENST00000532935 PEG3Q9GZU2 1588 aa28.97■■■□□ 2.23
CPSF1-210ENST00000532935 BAZ1BQ9UIG0 1483 aaKnown RBP28.86■■■□□ 2.21
CPSF1-210ENST00000532935 WIZO95785 1651 aa28.74■■■□□ 2.19
CPSF1-210ENST00000532935 RSF1Q96T23 1441 aaPredicted RBP28.6■■■□□ 2.17
CPSF1-210ENST00000532935 NESP48681 1621 aa28.47■■■□□ 2.15
CPSF1-210ENST00000532935 ERCC6Q03468 1493 aa28.4■■■□□ 2.14
CPSF1-210ENST00000532935 TOP2AP11388 1531 aaKnown RBP28.39■■■□□ 2.14
CPSF1-210ENST00000532935 LAMC3Q9Y6N6 1575 aa28.39■■■□□ 2.14
CPSF1-210ENST00000532935 CADPSQ9ULU8 1353 aa28.24■■■□□ 2.11
CPSF1-210ENST00000532935 KIF21AQ7Z4S6 1674 aa28.19■■■□□ 2.1
CPSF1-210ENST00000532935 PDS5BQ9NTI5 1447 aa28.17■■■□□ 2.1
CPSF1-210ENST00000532935 CUX2O14529 1486 aa28.15■■■□□ 2.1
CPSF1-210ENST00000532935 THOC2Q8NI27 1593 aaKnown RBP28.1■■■□□ 2.09
CPSF1-210ENST00000532935 CFTRP13569 1480 aa28.05■■■□□ 2.08
CPSF1-210ENST00000532935 CCDC88BA6NC98 1476 aa28.03■■■□□ 2.08
CPSF1-210ENST00000532935 PRDM2Q13029 1718 aa27.96■■■□□ 2.07
CPSF1-210ENST00000532935 FANCD2Q9BXW9 1451 aa27.93■■■□□ 2.06
CPSF1-210ENST00000532935 CEP164Q9UPV0 1460 aa27.92■■■□□ 2.06
CPSF1-210ENST00000532935 MRC2Q9UBG0 1479 aa27.9■■■□□ 2.06
CPSF1-210ENST00000532935 WDR62O43379 1518 aa27.83■■■□□ 2.05
CPSF1-210ENST00000532935 SUPT5HO00267 1087 aaKnown RBP27.76■■■□□ 2.03
CPSF1-210ENST00000532935 URB2Q14146 1524 aaKnown RBP27.67■■■□□ 2.02
CPSF1-210ENST00000532935 TOPBP1Q92547 1522 aa27.48■■□□□ 1.99
CPSF1-210ENST00000532935 ABCC8Q09428 1581 aa27.46■■□□□ 1.99
CPSF1-210ENST00000532935 DNMBPQ6XZF7 1577 aa27.46■■□□□ 1.99
CPSF1-210ENST00000532935 DNAJC5Q9H3Z4 198 aa27.4■■□□□ 1.98
CPSF1-210ENST00000532935 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
CPSF1-210ENST00000532935 CUX1P39880 1505 aa27.23■■□□□ 1.95
CPSF1-210ENST00000532935 ZNF608Q9ULD9 1512 aaPredicted RBP27.23■■□□□ 1.95
CPSF1-210ENST00000532935 POLA1P09884 1462 aaPredicted RBP27.23■■□□□ 1.95
CPSF1-210ENST00000532935 TARBP1Q13395 1621 aaKnown RBP27.22■■□□□ 1.95
CPSF1-210ENST00000532935 EIF4G3O43432 1585 aaKnown RBP27.15■■□□□ 1.94
CPSF1-210ENST00000532935 FGD5Q6ZNL6 1462 aa27.15■■□□□ 1.94
CPSF1-210ENST00000532935 RAD54L2Q9Y4B4 1467 aa27.11■■□□□ 1.93
CPSF1-210ENST00000532935 SOGA1O94964 1423 aa27.1■■□□□ 1.93
CPSF1-210ENST00000532935 AQRO60306 1485 aaKnown RBP eCLIP27.04■■□□□ 1.926e-9■■□□□ 14
CPSF1-210ENST00000532935 WDR97A6NE52 1622 aa27■■□□□ 1.91
CPSF1-210ENST00000532935 BIVM-ERCC5R4GMW8 1640 aa27■■□□□ 1.91
CPSF1-210ENST00000532935 WRNQ14191 1432 aaPredicted RBP eCLIP26.98■■□□□ 1.91
CPSF1-210ENST00000532935 TOP2BQ02880 1626 aa26.98■■□□□ 1.91
CPSF1-210ENST00000532935 SYNJ1O43426 1573 aa26.97■■□□□ 1.91
CPSF1-210ENST00000532935 TDRD9Q8NDG6 1382 aaKnown RBP26.96■■□□□ 1.91
CPSF1-210ENST00000532935 OSCARQ8IYS5 282 aa26.92■■□□□ 1.9
CPSF1-210ENST00000532935 CHD1O14646 1710 aa26.88■■□□□ 1.89
CPSF1-210ENST00000532935 ABCA10Q8WWZ4 1543 aa26.88■■□□□ 1.89
CPSF1-210ENST00000532935 PBRM1Q86U86 1689 aa26.84■■□□□ 1.89
CPSF1-210ENST00000532935 ABCA5Q8WWZ7 1642 aa26.83■■□□□ 1.88
CPSF1-210ENST00000532935 GRIN2BQ13224 1484 aa26.81■■□□□ 1.88
CPSF1-210ENST00000532935 SNAPC4Q5SXM2 1469 aa26.81■■□□□ 1.88
CPSF1-210ENST00000532935 GAPVD1Q14C86 1478 aa26.8■■□□□ 1.88
CPSF1-210ENST00000532935 MAGI1Q96QZ7 1491 aaPredicted RBP26.76■■□□□ 1.87
CPSF1-210ENST00000532935 FBLN2P98095 1184 aa26.72■■□□□ 1.87
CPSF1-210ENST00000532935 SYNJ2O15056 1496 aa26.66■■□□□ 1.86
CPSF1-210ENST00000532935 CHMP7Q8WUX9 453 aaPredicted RBP26.63■■□□□ 1.85
CPSF1-210ENST00000532935 RIMBP3CA6NJZ7 1639 aa26.58■■□□□ 1.85
CPSF1-210ENST00000532935 RIMBP3BA6NNM3 1639 aa26.58■■□□□ 1.85
CPSF1-210ENST00000532935 RIMBP3Q9UFD9 1639 aa26.58■■□□□ 1.85
CPSF1-210ENST00000532935 ADAMTS12P58397 1594 aa26.57■■□□□ 1.84
CPSF1-210ENST00000532935 ERICH3Q5RHP9 1530 aa26.56■■□□□ 1.84
CPSF1-210ENST00000532935 ARHGEF11O15085 1522 aa26.53■■□□□ 1.84
CPSF1-210ENST00000532935 CLASP1Q7Z460 1538 aa26.53■■□□□ 1.84
CPSF1-210ENST00000532935 FHAD1B1AJZ9 1412 aa26.48■■□□□ 1.83
CPSF1-210ENST00000532935 GRIN2AQ12879 1464 aa26.47■■□□□ 1.83
CPSF1-210ENST00000532935 TRIM41Q8WV44 630 aa26.45■■□□□ 1.82
CPSF1-210ENST00000532935 KIF27Q86VH2 1401 aa26.42■■□□□ 1.82
CPSF1-210ENST00000532935 CEP170Q5SW79 1584 aa26.37■■□□□ 1.81
CPSF1-210ENST00000532935 NUP160Q12769 1436 aa26.35■■□□□ 1.81
CPSF1-210ENST00000532935 CUL7Q14999 1698 aa26.34■■□□□ 1.81
CPSF1-210ENST00000532935 IGF1RP08069 1367 aa26.32■■□□□ 1.8
CPSF1-210ENST00000532935 ARAP1Q96P48 1450 aa26.3■■□□□ 1.8
CPSF1-210ENST00000532935 CYB5RLQ6IPT4 315 aa26.25■■□□□ 1.79
CPSF1-210ENST00000532935 SHROOM2Q13796 1616 aa26.21■■□□□ 1.79
CPSF1-210ENST00000532935 RUSC2Q8N2Y8 1516 aa26.19■■□□□ 1.78
CPSF1-210ENST00000532935 CARMIL1Q5VZK9 1371 aa26.17■■□□□ 1.78
CPSF1-210ENST00000532935 ERCC6L2Q5T890 1561 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms