RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 NISCHQ9Y2I1 1504 aa36.55■■■■□ 3.44
CPSF1-201ENST00000526271 ABCC9O60706 1549 aa33.03■■■□□ 2.88
CPSF1-201ENST00000526271 CCDC180Q9P1Z9 1646 aa32.84■■■□□ 2.85
CPSF1-201ENST00000526271 RB1CC1Q8TDY2 1594 aa31.28■■■□□ 2.6
CPSF1-201ENST00000526271 DNAJC5BQ9UF47 199 aa31.28■■■□□ 2.6
CPSF1-201ENST00000526271 NACADO15069 1562 aa31.05■■■□□ 2.56
CPSF1-201ENST00000526271 UNC13AQ9UPW8 1703 aa30.81■■■□□ 2.52
CPSF1-201ENST00000526271 DCAF8L2P0C7V8 631 aa30.72■■■□□ 2.51
CPSF1-201ENST00000526271 PABPN1Q86U42 306 aaKnown RBP eCLIP30.71■■■□□ 2.516e-8■■■■■ 27.4
CPSF1-201ENST00000526271 BICRAQ9NZM4 1560 aa30.59■■■□□ 2.49
CPSF1-201ENST00000526271 MYO15BQ96JP2 1530 aa30.58■■■□□ 2.49
CPSF1-201ENST00000526271 ZCCHC6Q5VYS8 1495 aaKnown RBP30.29■■■□□ 2.44
CPSF1-201ENST00000526271 DCAF1Q9Y4B6 1507 aa30.15■■■□□ 2.42
CPSF1-201ENST00000526271 SCRIBQ14160 1630 aa29.95■■■□□ 2.38
CPSF1-201ENST00000526271 SHROOM4Q9ULL8 1493 aa29.91■■■□□ 2.38
CPSF1-201ENST00000526271 CC2D2AQ9P2K1 1620 aa29.86■■■□□ 2.37
CPSF1-201ENST00000526271 EIF4G1Q04637 1599 aaKnown RBP29.74■■■□□ 2.35
CPSF1-201ENST00000526271 CECR2Q9BXF3 1484 aa29.73■■■□□ 2.35
CPSF1-201ENST00000526271 NCAPD3P42695 1498 aa28.71■■■□□ 2.19
CPSF1-201ENST00000526271 DNAJC5Q9H3Z4 198 aa28.66■■■□□ 2.18
CPSF1-201ENST00000526271 ATAD2BQ9ULI0 1458 aa28.63■■■□□ 2.17
CPSF1-201ENST00000526271 SMARCA4P51532 1647 aa28.57■■■□□ 2.16
CPSF1-201ENST00000526271 HMGXB3Q12766 1538 aa28.47■■■□□ 2.15
CPSF1-201ENST00000526271 CUX2O14529 1486 aa28.45■■■□□ 2.14
CPSF1-201ENST00000526271 SMARCA2P51531 1590 aa28.43■■■□□ 2.14
CPSF1-201ENST00000526271 NESP48681 1621 aa28.4■■■□□ 2.14
CPSF1-201ENST00000526271 ERCC6Q03468 1493 aa28.38■■■□□ 2.13
CPSF1-201ENST00000526271 BAZ1AQ9NRL2 1556 aaPredicted RBP28.31■■■□□ 2.12
CPSF1-201ENST00000526271 PEG3Q9GZU2 1588 aa28.3■■■□□ 2.12
CPSF1-201ENST00000526271 BAZ1BQ9UIG0 1483 aaKnown RBP28.25■■■□□ 2.11
CPSF1-201ENST00000526271 MROH2BQ7Z745 1585 aa28.23■■■□□ 2.11
CPSF1-201ENST00000526271 THOC2Q8NI27 1593 aaKnown RBP28.16■■■□□ 2.1
CPSF1-201ENST00000526271 LAMC3Q9Y6N6 1575 aa28.04■■■□□ 2.08
CPSF1-201ENST00000526271 KIF21AQ7Z4S6 1674 aa28.03■■■□□ 2.08
CPSF1-201ENST00000526271 WIZO95785 1651 aa27.88■■■□□ 2.05
CPSF1-201ENST00000526271 PDS5BQ9NTI5 1447 aa27.8■■■□□ 2.04
CPSF1-201ENST00000526271 CADPSQ9ULU8 1353 aa27.78■■■□□ 2.04
CPSF1-201ENST00000526271 WDR62O43379 1518 aa27.67■■■□□ 2.02
CPSF1-201ENST00000526271 MRC2Q9UBG0 1479 aa27.66■■■□□ 2.02
CPSF1-201ENST00000526271 RSF1Q96T23 1441 aaPredicted RBP27.53■■■□□ 2
CPSF1-201ENST00000526271 FANCD2Q9BXW9 1451 aa27.49■■□□□ 1.99
CPSF1-201ENST00000526271 CEP164Q9UPV0 1460 aa27.49■■□□□ 1.99
CPSF1-201ENST00000526271 CFTRP13569 1480 aa27.48■■□□□ 1.99
CPSF1-201ENST00000526271 TOP2AP11388 1531 aaKnown RBP27.44■■□□□ 1.98
CPSF1-201ENST00000526271 URB2Q14146 1524 aaKnown RBP27.36■■□□□ 1.97
CPSF1-201ENST00000526271 TRIM41Q8WV44 630 aa27.26■■□□□ 1.95
CPSF1-201ENST00000526271 PRDM2Q13029 1718 aa27.22■■□□□ 1.95
CPSF1-201ENST00000526271 CCDC88BA6NC98 1476 aa27.17■■□□□ 1.94
CPSF1-201ENST00000526271 ZNF608Q9ULD9 1512 aaPredicted RBP27.06■■□□□ 1.92
CPSF1-201ENST00000526271 OSCARQ8IYS5 282 aa27.04■■□□□ 1.92
CPSF1-201ENST00000526271 TOPBP1Q92547 1522 aa27■■□□□ 1.91
CPSF1-201ENST00000526271 IFT140Q96RY7 1462 aa26.94■■□□□ 1.9
CPSF1-201ENST00000526271 RIMBP3CA6NJZ7 1639 aa26.9■■□□□ 1.9
CPSF1-201ENST00000526271 RIMBP3BA6NNM3 1639 aa26.9■■□□□ 1.9
CPSF1-201ENST00000526271 RIMBP3Q9UFD9 1639 aa26.9■■□□□ 1.9
CPSF1-201ENST00000526271 EIF4G3O43432 1585 aaKnown RBP26.86■■□□□ 1.89
CPSF1-201ENST00000526271 DNMBPQ6XZF7 1577 aa26.85■■□□□ 1.89
CPSF1-201ENST00000526271 TARBP1Q13395 1621 aaKnown RBP26.83■■□□□ 1.89
CPSF1-201ENST00000526271 ARHGEF11O15085 1522 aa26.76■■□□□ 1.87
CPSF1-201ENST00000526271 ABCC8Q09428 1581 aa26.75■■□□□ 1.87
CPSF1-201ENST00000526271 AQRO60306 1485 aaKnown RBP eCLIP26.74■■□□□ 1.876e-9■■□□□ 14
CPSF1-201ENST00000526271 CHD1O14646 1710 aa26.72■■□□□ 1.87
CPSF1-201ENST00000526271 POLA1P09884 1462 aaPredicted RBP26.71■■□□□ 1.87
CPSF1-201ENST00000526271 RAD54L2Q9Y4B4 1467 aa26.65■■□□□ 1.86
CPSF1-201ENST00000526271 ARAP1Q96P48 1450 aa26.54■■□□□ 1.84
CPSF1-201ENST00000526271 CUX1P39880 1505 aa26.52■■□□□ 1.84
CPSF1-201ENST00000526271 TDRD9Q8NDG6 1382 aaKnown RBP26.52■■□□□ 1.84
CPSF1-201ENST00000526271 FGD5Q6ZNL6 1462 aa26.5■■□□□ 1.83
CPSF1-201ENST00000526271 SOGA1O94964 1423 aa26.5■■□□□ 1.83
CPSF1-201ENST00000526271 CYB5RLQ6IPT4 315 aa26.48■■□□□ 1.83
CPSF1-201ENST00000526271 SNAPC4Q5SXM2 1469 aa26.44■■□□□ 1.82
CPSF1-201ENST00000526271 CLASP1Q7Z460 1538 aa26.42■■□□□ 1.82
CPSF1-201ENST00000526271 WDR97A6NE52 1622 aa26.42■■□□□ 1.82
CPSF1-201ENST00000526271 FBLN2P98095 1184 aa26.41■■□□□ 1.82
CPSF1-201ENST00000526271 MAGI1Q96QZ7 1491 aaPredicted RBP26.3■■□□□ 1.8
CPSF1-201ENST00000526271 GRIN2BQ13224 1484 aa26.29■■□□□ 1.8
CPSF1-201ENST00000526271 PBRM1Q86U86 1689 aa26.27■■□□□ 1.8
CPSF1-201ENST00000526271 SYNJ1O43426 1573 aa26.24■■□□□ 1.79
CPSF1-201ENST00000526271 SYNJ2O15056 1496 aa26.23■■□□□ 1.79
CPSF1-201ENST00000526271 ABCA5Q8WWZ7 1642 aa26.23■■□□□ 1.79
CPSF1-201ENST00000526271 GAPVD1Q14C86 1478 aa26.19■■□□□ 1.78
CPSF1-201ENST00000526271 CHMP7Q8WUX9 453 aaPredicted RBP26.19■■□□□ 1.78
CPSF1-201ENST00000526271 ABCA10Q8WWZ4 1543 aa26.19■■□□□ 1.78
CPSF1-201ENST00000526271 TRHP20396 242 aaPredicted RBP26.13■■□□□ 1.77
CPSF1-201ENST00000526271 ERCC6L2Q5T890 1561 aa26.08■■□□□ 1.77
CPSF1-201ENST00000526271 SUPT5HO00267 1087 aaKnown RBP26.05■■□□□ 1.76
CPSF1-201ENST00000526271 BIVM-ERCC5R4GMW8 1640 aa26.03■■□□□ 1.76
CPSF1-201ENST00000526271 ADAMTS12P58397 1594 aa26.01■■□□□ 1.75
CPSF1-201ENST00000526271 CEP170Q5SW79 1584 aa25.99■■□□□ 1.75
CPSF1-201ENST00000526271 GRIN2AQ12879 1464 aa25.99■■□□□ 1.75
CPSF1-201ENST00000526271 TOP2BQ02880 1626 aa25.99■■□□□ 1.75
CPSF1-201ENST00000526271 NUP160Q12769 1436 aa25.96■■□□□ 1.75
CPSF1-201ENST00000526271 WRNQ14191 1432 aaPredicted RBP eCLIP25.94■■□□□ 1.74
CPSF1-201ENST00000526271 SHROOM2Q13796 1616 aa25.9■■□□□ 1.74
CPSF1-201ENST00000526271 FHAD1B1AJZ9 1412 aa25.83■■□□□ 1.73
CPSF1-201ENST00000526271 ERICH3Q5RHP9 1530 aa25.81■■□□□ 1.72
CPSF1-201ENST00000526271 KIF13AQ9H1H9 1805 aa25.67■■□□□ 1.7
CPSF1-201ENST00000526271 RUSC2Q8N2Y8 1516 aa25.66■■□□□ 1.7
CPSF1-201ENST00000526271 PRG4Q92954 1404 aaPredicted RBP25.64■■□□□ 1.7
CPSF1-201ENST00000526271 JPH4Q96JJ6 628 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 151.3 ms