Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 RN7SL163P-201ENST00000583100 276 ntBASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 AL645939.5-201ENST00000606834 243 ntBASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 AP000346.4-201ENST00000614827 381 ntBASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 AC138627.1-207ENST00000641560 1006 ntBASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 AC004923.1-202ENST00000642106 209 ntBASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 AL359258.3-201ENST00000622910 2331 ntBASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRAIPQ9BWF2 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 PCDHA3-202ENST00000532566 4594 ntBASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 AC020910.5-201ENST00000623668 1865 ntBASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 LINC00528-201ENST00000600723 2160 ntBASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 AL122018.1-201ENST00000446607 2310 ntBASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 FGD5P1-202ENST00000614866 2498 ntBASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRAIPQ9BWF2 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms