RNA–Protein interactions for RNA: ENST00000321253.6

TUBA3D-201, Transcript of tubulin alpha 3d, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TUBA3D, Length 1,546 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBA3D-201ENST00000321253 NISCHQ9Y2I1 1504 aa35.66■■■■□ 3.3
TUBA3D-201ENST00000321253 CCDC180Q9P1Z9 1646 aa31.76■■■□□ 2.67
TUBA3D-201ENST00000321253 ABCC9O60706 1549 aa31.17■■■□□ 2.58
TUBA3D-201ENST00000321253 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
TUBA3D-201ENST00000321253 DCAF8L2P0C7V8 631 aa29.89■■■□□ 2.38
TUBA3D-201ENST00000321253 NACADO15069 1562 aa29.88■■■□□ 2.37
TUBA3D-201ENST00000321253 ZCCHC6Q5VYS8 1495 aaKnown RBP29.68■■■□□ 2.34
TUBA3D-201ENST00000321253 MYO15BQ96JP2 1530 aa29.65■■■□□ 2.34
TUBA3D-201ENST00000321253 DCAF1Q9Y4B6 1507 aa29.5■■■□□ 2.31
TUBA3D-201ENST00000321253 UNC13AQ9UPW8 1703 aa29.23■■■□□ 2.27
TUBA3D-201ENST00000321253 PABPN1Q86U42 306 aaKnown RBP eCLIP29.11■■■□□ 2.25
TUBA3D-201ENST00000321253 BICRAQ9NZM4 1560 aa28.99■■■□□ 2.23
TUBA3D-201ENST00000321253 SCRIBQ14160 1630 aa28.98■■■□□ 2.23
TUBA3D-201ENST00000321253 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
TUBA3D-201ENST00000321253 DNAJC5BQ9UF47 199 aa28.64■■■□□ 2.17
TUBA3D-201ENST00000321253 EIF4G1Q04637 1599 aaKnown RBP28.27■■■□□ 2.12
TUBA3D-201ENST00000321253 CC2D2AQ9P2K1 1620 aa28.18■■■□□ 2.1
TUBA3D-201ENST00000321253 CECR2Q9BXF3 1484 aa28.02■■■□□ 2.08
TUBA3D-201ENST00000321253 SMARCA4P51532 1647 aa27.7■■■□□ 2.02
TUBA3D-201ENST00000321253 BAZ1AQ9NRL2 1556 aaPredicted RBP27.67■■■□□ 2.02
TUBA3D-201ENST00000321253 ATAD2BQ9ULI0 1458 aa27.56■■■□□ 2
TUBA3D-201ENST00000321253 NCAPD3P42695 1498 aa27.56■■■□□ 2
TUBA3D-201ENST00000321253 SMARCA2P51531 1590 aa27.55■■■□□ 2
TUBA3D-201ENST00000321253 MROH2BQ7Z745 1585 aa27.48■■□□□ 1.99
TUBA3D-201ENST00000321253 HMGXB3Q12766 1538 aa27.43■■□□□ 1.98
TUBA3D-201ENST00000321253 PEG3Q9GZU2 1588 aa27.41■■□□□ 1.98
TUBA3D-201ENST00000321253 BAZ1BQ9UIG0 1483 aaKnown RBP27.36■■□□□ 1.97
TUBA3D-201ENST00000321253 WIZO95785 1651 aa27.18■■□□□ 1.94
TUBA3D-201ENST00000321253 RSF1Q96T23 1441 aaPredicted RBP27.13■■□□□ 1.93
TUBA3D-201ENST00000321253 NESP48681 1621 aa26.93■■□□□ 1.9
TUBA3D-201ENST00000321253 ERCC6Q03468 1493 aa26.91■■□□□ 1.9
TUBA3D-201ENST00000321253 TOP2AP11388 1531 aaKnown RBP26.9■■□□□ 1.9
TUBA3D-201ENST00000321253 LAMC3Q9Y6N6 1575 aa26.86■■□□□ 1.89
TUBA3D-201ENST00000321253 CADPSQ9ULU8 1353 aa26.76■■□□□ 1.87
TUBA3D-201ENST00000321253 PDS5BQ9NTI5 1447 aa26.71■■□□□ 1.87
TUBA3D-201ENST00000321253 CUX2O14529 1486 aa26.62■■□□□ 1.85
TUBA3D-201ENST00000321253 KIF21AQ7Z4S6 1674 aa26.61■■□□□ 1.85
TUBA3D-201ENST00000321253 CFTRP13569 1480 aa26.58■■□□□ 1.85
TUBA3D-201ENST00000321253 CCDC88BA6NC98 1476 aa26.57■■□□□ 1.84
TUBA3D-201ENST00000321253 THOC2Q8NI27 1593 aaKnown RBP26.54■■□□□ 1.84
TUBA3D-201ENST00000321253 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
TUBA3D-201ENST00000321253 CEP164Q9UPV0 1460 aa26.45■■□□□ 1.82
TUBA3D-201ENST00000321253 SUPT5HO00267 1087 aaKnown RBP26.43■■□□□ 1.82
TUBA3D-201ENST00000321253 MRC2Q9UBG0 1479 aa26.42■■□□□ 1.82
TUBA3D-201ENST00000321253 PRDM2Q13029 1718 aa26.38■■□□□ 1.81
TUBA3D-201ENST00000321253 WDR62O43379 1518 aa26.32■■□□□ 1.8
TUBA3D-201ENST00000321253 URB2Q14146 1524 aaKnown RBP26.18■■□□□ 1.78
TUBA3D-201ENST00000321253 ABCC8Q09428 1581 aa26.04■■□□□ 1.76
TUBA3D-201ENST00000321253 TOPBP1Q92547 1522 aa26.02■■□□□ 1.76
TUBA3D-201ENST00000321253 DNMBPQ6XZF7 1577 aa26■■□□□ 1.75
TUBA3D-201ENST00000321253 IFT140Q96RY7 1462 aa25.89■■□□□ 1.74
TUBA3D-201ENST00000321253 DNAJC5Q9H3Z4 198 aa25.89■■□□□ 1.74
TUBA3D-201ENST00000321253 POLA1P09884 1462 aaPredicted RBP25.8■■□□□ 1.72
TUBA3D-201ENST00000321253 CUX1P39880 1505 aa25.79■■□□□ 1.72
TUBA3D-201ENST00000321253 ZNF608Q9ULD9 1512 aaPredicted RBP25.77■■□□□ 1.72
TUBA3D-201ENST00000321253 FGD5Q6ZNL6 1462 aa25.73■■□□□ 1.71
TUBA3D-201ENST00000321253 TARBP1Q13395 1621 aaKnown RBP25.73■■□□□ 1.71
TUBA3D-201ENST00000321253 SOGA1O94964 1423 aa25.7■■□□□ 1.71
TUBA3D-201ENST00000321253 RAD54L2Q9Y4B4 1467 aa25.68■■□□□ 1.7
TUBA3D-201ENST00000321253 EIF4G3O43432 1585 aaKnown RBP25.68■■□□□ 1.7
TUBA3D-201ENST00000321253 AQRO60306 1485 aaKnown RBP eCLIP25.62■■□□□ 1.69
TUBA3D-201ENST00000321253 WRNQ14191 1432 aaPredicted RBP eCLIP25.61■■□□□ 1.69
TUBA3D-201ENST00000321253 TDRD9Q8NDG6 1382 aaKnown RBP25.57■■□□□ 1.68
TUBA3D-201ENST00000321253 WDR97A6NE52 1622 aa25.55■■□□□ 1.68
TUBA3D-201ENST00000321253 TOP2BQ02880 1626 aa25.55■■□□□ 1.68
TUBA3D-201ENST00000321253 BIVM-ERCC5R4GMW8 1640 aa25.54■■□□□ 1.68
TUBA3D-201ENST00000321253 SYNJ1O43426 1573 aa25.54■■□□□ 1.68
TUBA3D-201ENST00000321253 OSCARQ8IYS5 282 aa25.52■■□□□ 1.68
TUBA3D-201ENST00000321253 ABCA10Q8WWZ4 1543 aa25.46■■□□□ 1.67
TUBA3D-201ENST00000321253 GRIN2BQ13224 1484 aa25.42■■□□□ 1.66
TUBA3D-201ENST00000321253 GAPVD1Q14C86 1478 aa25.4■■□□□ 1.66
TUBA3D-201ENST00000321253 SNAPC4Q5SXM2 1469 aa25.4■■□□□ 1.66
TUBA3D-201ENST00000321253 FBLN2P98095 1184 aa25.38■■□□□ 1.65
TUBA3D-201ENST00000321253 ABCA5Q8WWZ7 1642 aa25.37■■□□□ 1.65
TUBA3D-201ENST00000321253 CHD1O14646 1710 aa25.37■■□□□ 1.65
TUBA3D-201ENST00000321253 MAGI1Q96QZ7 1491 aaPredicted RBP25.36■■□□□ 1.65
TUBA3D-201ENST00000321253 PBRM1Q86U86 1689 aa25.35■■□□□ 1.65
TUBA3D-201ENST00000321253 CHMP7Q8WUX9 453 aaPredicted RBP25.28■■□□□ 1.64
TUBA3D-201ENST00000321253 SYNJ2O15056 1496 aa25.26■■□□□ 1.63
TUBA3D-201ENST00000321253 ERICH3Q5RHP9 1530 aa25.17■■□□□ 1.62
TUBA3D-201ENST00000321253 ADAMTS12P58397 1594 aa25.14■■□□□ 1.62
TUBA3D-201ENST00000321253 FHAD1B1AJZ9 1412 aa25.11■■□□□ 1.61
TUBA3D-201ENST00000321253 RIMBP3CA6NJZ7 1639 aa25.1■■□□□ 1.61
TUBA3D-201ENST00000321253 RIMBP3BA6NNM3 1639 aa25.1■■□□□ 1.61
TUBA3D-201ENST00000321253 RIMBP3Q9UFD9 1639 aa25.1■■□□□ 1.61
TUBA3D-201ENST00000321253 KIF27Q86VH2 1401 aa25.1■■□□□ 1.61
TUBA3D-201ENST00000321253 ARHGEF11O15085 1522 aa25.09■■□□□ 1.61
TUBA3D-201ENST00000321253 GRIN2AQ12879 1464 aa25.08■■□□□ 1.61
TUBA3D-201ENST00000321253 CLASP1Q7Z460 1538 aa25.08■■□□□ 1.61
TUBA3D-201ENST00000321253 TRIM41Q8WV44 630 aa25.06■■□□□ 1.6
TUBA3D-201ENST00000321253 IGF1RP08069 1367 aa24.96■■□□□ 1.59
TUBA3D-201ENST00000321253 NUP160Q12769 1436 aa24.96■■□□□ 1.59
TUBA3D-201ENST00000321253 CEP170Q5SW79 1584 aa24.95■■□□□ 1.58
TUBA3D-201ENST00000321253 CUL7Q14999 1698 aa24.94■■□□□ 1.58
TUBA3D-201ENST00000321253 CYB5RLQ6IPT4 315 aa24.88■■□□□ 1.57
TUBA3D-201ENST00000321253 ARAP1Q96P48 1450 aa24.87■■□□□ 1.57
TUBA3D-201ENST00000321253 CARMIL1Q5VZK9 1371 aa24.84■■□□□ 1.57
TUBA3D-201ENST00000321253 RUSC2Q8N2Y8 1516 aa24.79■■□□□ 1.56
TUBA3D-201ENST00000321253 SHROOM2Q13796 1616 aa24.78■■□□□ 1.56
TUBA3D-201ENST00000321253 JPH4Q96JJ6 628 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms